panaroo

An updated pipeline for pangenome investigation

Documentation

Documentation for Panaroo can be found here

Name		Name	Last commit message	Last commit date
Latest commit History 748 Commits
.github/workflows		.github/workflows
docs		docs
panaroo		panaroo
scripts		scripts
tests		tests
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
panaroo-estimate-fmg.py		panaroo-estimate-fmg.py
panaroo-estimate-img.py		panaroo-estimate-img.py
panaroo-extract-gene.py		panaroo-extract-gene.py
panaroo-filter-pa.py		panaroo-filter-pa.py
panaroo-integrate-runner.py		panaroo-integrate-runner.py
panaroo-merge-runner.py		panaroo-merge-runner.py
panaroo-msa-runner.py		panaroo-msa-runner.py
panaroo-qc-runner.py		panaroo-qc-runner.py
panaroo-runner.py		panaroo-runner.py
panaroo-spydrpick-runner.py		panaroo-spydrpick-runner.py
panaroo.png		panaroo.png
panaroo_gene_neighbourhood.py		panaroo_gene_neighbourhood.py
post-plot-runner.py		post-plot-runner.py
prokka-runner.py		prokka-runner.py
setup.py		setup.py