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Bugfix: Fix logic for computing the 100-th percentile #2644

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JohnHalleyGotway opened this issue Aug 14, 2023 · 0 comments · Fixed by #2645, #2646 or #2647
Closed
8 of 22 tasks

Bugfix: Fix logic for computing the 100-th percentile #2644

JohnHalleyGotway opened this issue Aug 14, 2023 · 0 comments · Fixed by #2645, #2646 or #2647
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MET: Library Code priority: blocker Blocker requestor: NOAA/EMC NOAA Environmental Modeling Center type: bug Fix something that is not working

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@JohnHalleyGotway
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JohnHalleyGotway commented Aug 14, 2023

Describe the Problem

This issue arose via dtcenter/METplus#2298 and is described in this comment. Recommend enhancing the logic for the percentile() and percentile_f() functions in ptile.cc to check bounds and prevent reading beyond the end of the array.

Expected Behavior

Requesting the 100-th percentile from these functions should return the maximum value and not read past the end of the array.

Environment

Describe your runtime environment:
Reported by @malloryprow when testing on the WCOSS2 dogwood machine. However, this behavior is only reproducible when running multiple Point-Stat jobs via cron. It does not appear when running on the command line. This transient behavior is consistent with a memory problem.

I was never able to directly reproduce this problem myself. However, adding one line to the percentile() function did trigger the exact same error message that @malloryprow reported:

double percentile(const double *ordered_array, const int n, const double t)

{

int index;
double delta;
double p = bad_data_double;

// JHG, add this line for testing
if(is_eq(t,1.0)) return ( p );

Produces these warning/error messages:

DEBUG 3: The observation threshold value ">20.0" represents the 100-th percentile.
DEBUG 3: For forecast threshold "==FBIAS1" with type ">" update the requested percentile from 100 to 100.
WARNING: 
WARNING: Simple_Node::set_perc() -> the requested percentile (100) for threshold "==FBIAS1" differs from the actual percentile (0) by 100.
WARNING: This is common for small samples or data that contains ties.
WARNING: 
DEBUG 3: The requested percentile (95) for threshold ">=SOP95(2.2)" includes 95.6522% of the data.
DEBUG 2: Computing Categorical Statistics.
ERROR  : 
ERROR  : Simple_Node::check(double, double, double) const -> percentile threshold "==FBIAS1" used before it was set.
ERROR  : 

This implies that @malloryprow's call to the percentile function is returning bad data or nan. And its most likely the case that nan is being computed by reading past the end of the array.

Relevant Deadlines

Fix this in main_v11.0 prior to cutting an 11.0.3 bugfix release.
Also fix this in main_v11.1 and develop.

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@JohnHalleyGotway JohnHalleyGotway added type: bug Fix something that is not working requestor: NOAA/EMC NOAA Environmental Modeling Center priority: blocker Blocker MET: Library Code labels Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway added this to the MET 11.0.3 (bugfix) milestone Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway self-assigned this Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 📋 Backlog to 🔖 Ready in Coordinated METplus-5.0 Support Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this to 🏗 In progress in MET-12.0.0 Development Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from Todo to In Progress in Coordinated METplus-5.1 Support Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 🔖 Ready to 🏗 In progress in Coordinated METplus-5.0 Support Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 🏗 In progress to 👀 In review in Coordinated METplus-5.0 Support Aug 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 🏗 In progress to 👀 In review in MET-12.0.0 Development Aug 14, 2023
JohnHalleyGotway added a commit that referenced this issue Aug 16, 2023
JohnHalleyGotway added a commit that referenced this issue Aug 16, 2023
JohnHalleyGotway added a commit that referenced this issue Aug 16, 2023
JohnHalleyGotway added a commit that referenced this issue Aug 16, 2023
@github-project-automation github-project-automation bot moved this from 👀 In review to ✅ Done in Coordinated METplus-5.1 Support Aug 16, 2023
@github-project-automation github-project-automation bot moved this from 👀 In review to ✅ Done in Coordinated METplus-5.0 Support Aug 16, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 👀 In review to ✅ Done in MET-12.0.0 Development Aug 16, 2023
JohnHalleyGotway added a commit that referenced this issue Aug 21, 2023
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: jprestop <[email protected]>
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Co-authored-by: David Albo <[email protected]>
Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 main_v11.1 percentile (#2646)
JohnHalleyGotway pushed a commit that referenced this issue Aug 22, 2023
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
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fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Sep 6, 2023
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
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Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: David Albo <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Sep 11, 2023
Co-authored-by: MET Tools Test Account <[email protected]>
Co-authored-by: Howard Soh <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: hsoh-u <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: Stephen Herbener <[email protected]>
fix #2389 main_v11.0 flowchart (#2391)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405)
fix #2380 main_v11.0 override (#2381)
fix #2408 main_v11.0 empty config (#2409)
fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403)
fix #2415 main_v11.0 modulefiles (#2416)
fix #2412 main_v11.0 climo (#2420)
fix #2426 main_v11.0 buoy (#2432)
fix #2437 main_v11.0 convert (#2438)
fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix 2428 python from env main v11.0 (#2443)
fix 2428 python csv input (#2450)
fix #2452 main_v11.0 airnow (#2453)
fix #2402 main_v11.0 sonarqube (First PR) (#2447)
fix #2449 main_v11.0 pdf (#2465)
fix 2428 python csv input (#2467)
fix #2514 main_v11.0 clang (#2556)
fix #2575 main_v11.0 python_convert (#2577)
fix 2596 main v11.0 rpath compilation (#2600)
fix 2596 main v11.0 rpath compilation (#2613)
fix #2644 main_v11.0 percentile (#2645)
JohnHalleyGotway pushed a commit that referenced this issue Sep 15, 2023
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: Daniel Adriaansen <[email protected]>
Co-authored-by: John and Cindy <[email protected]>
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Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: David Albo <[email protected]>
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fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Oct 13, 2023
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: Daniel Adriaansen <[email protected]>
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Co-authored-by: Tracy Hertneky <[email protected]>
Co-authored-by: David Albo <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Nov 12, 2023
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: Daniel Adriaansen <[email protected]>
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Co-authored-by: MET Tools Test Account <[email protected]>
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Co-authored-by: David Albo <[email protected]>
Co-authored-by: Dan Adriaansen <[email protected]>
Co-authored-by: Julie Prestopnik <[email protected]>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
fix #2730 develop SI_BCU (#2732)
JohnHalleyGotway pushed a commit that referenced this issue Nov 17, 2023
Co-authored-by: jprestop <[email protected]>
Co-authored-by: Seth Linden <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: Daniel Adriaansen <[email protected]>
Co-authored-by: John and Cindy <[email protected]>
Co-authored-by: rgbullock <[email protected]>
Co-authored-by: Randy Bullock <[email protected]>
Co-authored-by: Dave Albo <[email protected]>
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Co-authored-by: MET Tools Test Account <[email protected]>
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Co-authored-by: lisagoodrich <[email protected]>
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Co-authored-by: root <root@83062d57c5dd>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
fix #2730 develop SI_BCU (#2732)
JohnHalleyGotway added a commit that referenced this issue Dec 18, 2023
…2770)

Co-authored-by: MET Tools Test Account <[email protected]>
Co-authored-by: Howard Soh <[email protected]>
Co-authored-by: John Halley Gotway <[email protected]>
Co-authored-by: jprestop <[email protected]>
Co-authored-by: hsoh-u <[email protected]>
Co-authored-by: George McCabe <[email protected]>
Co-authored-by: lisagoodrich <[email protected]>
Co-authored-by: Stephen Herbener <[email protected]>
fix #2389 main_v11.0 flowchart (#2391)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405)
fix #2380 main_v11.0 override (#2381)
fix #2408 main_v11.0 empty config (#2409)
fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403)
fix #2415 main_v11.0 modulefiles (#2416)
fix #2412 main_v11.0 climo (#2420)
fix #2426 main_v11.0 buoy (#2432)
fix #2437 main_v11.0 convert (#2438)
fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix 2428 python from env main v11.0 (#2443)
fix 2428 python csv input (#2450)
fix #2452 main_v11.0 airnow (#2453)
fix #2402 main_v11.0 sonarqube (First PR) (#2447)
fix #2449 main_v11.0 pdf (#2465)
fix 2428 python csv input (#2467)
fix #2514 main_v11.0 clang (#2556)
fix #2575 main_v11.0 python_convert (#2577)
fix 2596 main v11.0 rpath compilation (#2600)
fix 2596 main v11.0 rpath compilation (#2613)
fix #2644 main_v11.0 percentile (#2645)
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Labels
MET: Library Code priority: blocker Blocker requestor: NOAA/EMC NOAA Environmental Modeling Center type: bug Fix something that is not working
Projects
Status: 🏁 Done
1 participant