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Bugfix: Fix logic for computing the 100-th percentile #2644
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MET: Library Code
priority: blocker
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requestor: NOAA/EMC
NOAA Environmental Modeling Center
type: bug
Fix something that is not working
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type: bug
Fix something that is not working
requestor: NOAA/EMC
NOAA Environmental Modeling Center
priority: blocker
Blocker
MET: Library Code
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Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 main_v11.1 percentile (#2646)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: Stephen Herbener <[email protected]> fix #2389 main_v11.0 flowchart (#2391) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405) fix #2380 main_v11.0 override (#2381) fix #2408 main_v11.0 empty config (#2409) fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403) fix #2415 main_v11.0 modulefiles (#2416) fix #2412 main_v11.0 climo (#2420) fix #2426 main_v11.0 buoy (#2432) fix #2437 main_v11.0 convert (#2438) fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix 2428 python from env main v11.0 (#2443) fix 2428 python csv input (#2450) fix #2452 main_v11.0 airnow (#2453) fix #2402 main_v11.0 sonarqube (First PR) (#2447) fix #2449 main_v11.0 pdf (#2465) fix 2428 python csv input (#2467) fix #2514 main_v11.0 clang (#2556) fix #2575 main_v11.0 python_convert (#2577) fix 2596 main v11.0 rpath compilation (#2600) fix 2596 main v11.0 rpath compilation (#2613) fix #2644 main_v11.0 percentile (#2645)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647) fix #2730 develop SI_BCU (#2732)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: root <root@83062d57c5dd> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647) fix #2730 develop SI_BCU (#2732)
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…2770) Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: Stephen Herbener <[email protected]> fix #2389 main_v11.0 flowchart (#2391) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405) fix #2380 main_v11.0 override (#2381) fix #2408 main_v11.0 empty config (#2409) fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403) fix #2415 main_v11.0 modulefiles (#2416) fix #2412 main_v11.0 climo (#2420) fix #2426 main_v11.0 buoy (#2432) fix #2437 main_v11.0 convert (#2438) fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix 2428 python from env main v11.0 (#2443) fix 2428 python csv input (#2450) fix #2452 main_v11.0 airnow (#2453) fix #2402 main_v11.0 sonarqube (First PR) (#2447) fix #2449 main_v11.0 pdf (#2465) fix 2428 python csv input (#2467) fix #2514 main_v11.0 clang (#2556) fix #2575 main_v11.0 python_convert (#2577) fix 2596 main v11.0 rpath compilation (#2600) fix 2596 main v11.0 rpath compilation (#2613) fix #2644 main_v11.0 percentile (#2645)
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Labels
MET: Library Code
priority: blocker
Blocker
requestor: NOAA/EMC
NOAA Environmental Modeling Center
type: bug
Fix something that is not working
Describe the Problem
This issue arose via dtcenter/METplus#2298 and is described in this comment. Recommend enhancing the logic for the percentile() and percentile_f() functions in
ptile.cc
to check bounds and prevent reading beyond the end of the array.Expected Behavior
Requesting the 100-th percentile from these functions should return the maximum value and not read past the end of the array.
Environment
Describe your runtime environment:
Reported by @malloryprow when testing on the WCOSS2 dogwood machine. However, this behavior is only reproducible when running multiple Point-Stat jobs via cron. It does not appear when running on the command line. This transient behavior is consistent with a memory problem.
I was never able to directly reproduce this problem myself. However, adding one line to the percentile() function did trigger the exact same error message that @malloryprow reported:
Produces these warning/error messages:
This implies that @malloryprow's call to the percentile function is returning bad data or nan. And its most likely the case that nan is being computed by reading past the end of the array.
Relevant Deadlines
Fix this in main_v11.0 prior to cutting an 11.0.3 bugfix release.
Also fix this in main_v11.1 and develop.
Funding Source
Define the source of funding and account keys here or state NONE.
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Define Related Issue(s)
Consider the impact to the other METplus components.
No impacts.
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