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Bugfix: Fix logic for Python embedding with data censoring and/or conversion #2575
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Closed
8 of 23 tasks
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MET: Python Embedding
priority: blocker
Blocker
requestor: METplus Team
METplus Development Team
type: bug
Fix something that is not working
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JohnHalleyGotway
added
type: bug
Fix something that is not working
priority: blocker
Blocker
requestor: METplus Team
METplus Development Team
MET: Python Embedding
labels
Jun 14, 2023
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MET-11.1.0 Development and Coordinated METplus-5.0 Support
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…d in the MetPythonDataFile class rather than the original one. Otherwise, retrieving the data multiple times will cause the same conversion operation to be performed multiple times.
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15 tasks
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JohnHalleyGotway
moved this from 🏗 In progress
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Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576)
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Aug 1, 2023
Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> fix #2426 develop buoy (#2475) fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628)
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Aug 22, 2023
Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
JohnHalleyGotway
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Sep 6, 2023
Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Sep 11, 2023
Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: Stephen Herbener <[email protected]> fix #2389 main_v11.0 flowchart (#2391) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405) fix #2380 main_v11.0 override (#2381) fix #2408 main_v11.0 empty config (#2409) fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403) fix #2415 main_v11.0 modulefiles (#2416) fix #2412 main_v11.0 climo (#2420) fix #2426 main_v11.0 buoy (#2432) fix #2437 main_v11.0 convert (#2438) fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix 2428 python from env main v11.0 (#2443) fix 2428 python csv input (#2450) fix #2452 main_v11.0 airnow (#2453) fix #2402 main_v11.0 sonarqube (First PR) (#2447) fix #2449 main_v11.0 pdf (#2465) fix 2428 python csv input (#2467) fix #2514 main_v11.0 clang (#2556) fix #2575 main_v11.0 python_convert (#2577) fix 2596 main v11.0 rpath compilation (#2600) fix 2596 main v11.0 rpath compilation (#2613) fix #2644 main_v11.0 percentile (#2645)
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Sep 15, 2023
Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647) fix #2730 develop SI_BCU (#2732)
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Co-authored-by: jprestop <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: Daniel Adriaansen <[email protected]> Co-authored-by: John and Cindy <[email protected]> Co-authored-by: rgbullock <[email protected]> Co-authored-by: Randy Bullock <[email protected]> Co-authored-by: Dave Albo <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Seth Linden <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: davidalbo <[email protected]> Co-authored-by: Lisa Goodrich <[email protected]> Co-authored-by: metplus-bot <[email protected]> Co-authored-by: j-opatz <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: Tracy Hertneky <[email protected]> Co-authored-by: David Albo <[email protected]> Co-authored-by: Dan Adriaansen <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: root <root@83062d57c5dd> fix 2518 dtypes appf docs (#2519) fix 2531 compilation errors (#2533) fix #2531 compilation_errors_configure (#2535) fix #2514 develop clang (#2563) fix #2575 develop python_convert (#2576) Fix Python environment issue (#2407) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406) fix #2380 develop override (#2382) fix #2408 develop empty config (#2410) fix #2390 develop compile zlib (#2404) fix #2412 develop climo (#2422) fix #2437 develop convert (#2439) fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix #2452 develop airnow (#2454) fix #2449 develop pdf (#2464) fix #2402 develop sonarqube (#2468) fix #2426 develop buoy (#2475) fix 2596 main v11.1 rpath compilation (#2614) fix #2514 main_v11.1 clang (#2628) fix #2644 develop percentile (#2647) fix #2730 develop SI_BCU (#2732)
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…2770) Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: jprestop <[email protected]> Co-authored-by: hsoh-u <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: lisagoodrich <[email protected]> Co-authored-by: Stephen Herbener <[email protected]> fix #2389 main_v11.0 flowchart (#2391) fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405) fix #2380 main_v11.0 override (#2381) fix #2408 main_v11.0 empty config (#2409) fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403) fix #2415 main_v11.0 modulefiles (#2416) fix #2412 main_v11.0 climo (#2420) fix #2426 main_v11.0 buoy (#2432) fix #2437 main_v11.0 convert (#2438) fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup. fix 2428 python from env main v11.0 (#2443) fix 2428 python csv input (#2450) fix #2452 main_v11.0 airnow (#2453) fix #2402 main_v11.0 sonarqube (First PR) (#2447) fix #2449 main_v11.0 pdf (#2465) fix 2428 python csv input (#2467) fix #2514 main_v11.0 clang (#2556) fix #2575 main_v11.0 python_convert (#2577) fix 2596 main v11.0 rpath compilation (#2600) fix 2596 main v11.0 rpath compilation (#2613) fix #2644 main_v11.0 percentile (#2645)
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Labels
MET: Python Embedding
priority: blocker
Blocker
requestor: METplus Team
METplus Development Team
type: bug
Fix something that is not working
Describe the Problem
This issue was raised via discussion dtcenter/METplus#2214 and an explanation of the problem/solution can be found in this comment.
The fix is to modify the logic of
src/libcode/vx_data2d_python/data2d_python.cc
to apply data censoring and conversion operations on a copy of the DataPlane object read from the python script, rather than modifying the DataPlane object stored in the class. Otherwise, those operations will be applied each timeMetPythonDataFile::data_plane()
is called!Expected Behavior
@CPKalb found that running Grid-Stat with Python embedding and specifying a convert(x) function does not work as expected with MET version 11.0.1. The values written the NetCDF matched pairs file from Grid-Stat indicate that the conversion operation was applied 2 times.
To Reproduce
Describe the steps to reproduce the behavior:
Replicated the issue on seneca in
/d1/projects/METplus/discussions/2214/run.sh
Relevant Deadlines
List relevant project deadlines here or state NONE.
Funding Source
Define the source of funding and account keys here or state NONE.
Define the Metadata
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Define Related Issue(s)
Consider the impact to the other METplus components.
No impacts.
Bugfix Checklist
See the METplus Workflow for details.
Branch name:
bugfix_<Issue Number>_main_<Version>_<Description>
Pull request:
bugfix <Issue Number> main_<Version> <Description>
Select: Reviewer(s) and Development issues
Select: Organization level software support Project for the current coordinated release
Select: Milestone as the next bugfix version
Branch name:
bugfix_<Issue Number>_develop_<Description>
Pull request:
bugfix <Issue Number> develop <Description>
Select: Reviewer(s) and Development issues
Select: Repository level development cycle Project for the next official release
Select: Milestone as the next official version
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