Update rmats for osx-arm64 #52195
Update rmats for osx-arm64 #52195
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* Remove build_failure.osx-64.yaml * Increment build number
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* Unpin gsl
+ WARNING: failed to get package records, retrying. exception was: Unsatisfiable dependencies for platform osx-arm64: {MatchSpec("gsl=2.5")}
* Use setuptools instead of distutils
+ rMATS_pipeline/setup.py:2: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
+ ModuleNotFoundError: No module named 'distutils'
* STAR is only needed by rmats when starting with fastq files
* WARNING: failed to get package records, retrying. exception was: Unsatisfiable dependencies for platform osx-arm64: {MatchSpec("star[version='>=2.5']")}
+ STAR --version [...]run_test.sh: line 7: [...]/bin/STAR: Bad CPU type in executable
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The osx-64 build failure was due to distutils being removed in python 3.12. I added a patch to use setuptools instead. For osx-arm64 I removed the STAR dependency. It's really an optional dependency for rmats since rmats can be run starting with bam files. It looks like there was an attempt add osx-arm64 for STAR but it doesn't seem to be easy to get that working: #50348 |
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I removed the gsl=2.5 pin since osx-arm64 only seems to have 2.6 and 2.7 available: https://anaconda.org/conda-forge/gsl/files |
In response to Xinglab/rmats-turbo#395
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