Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update busco to v5.8.0 #51337

Merged
merged 3 commits into from
Oct 11, 2024
Merged

Update busco to v5.8.0 #51337

merged 3 commits into from
Oct 11, 2024

Conversation

berkelem
Copy link
Contributor

Update busco to v5.8.0

@berkelem
Copy link
Contributor Author

@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Oct 11, 2024
Copy link
Contributor

coderabbitai bot commented Oct 11, 2024

📝 Walkthrough

Walkthrough

The pull request introduces updates to the meta.yaml file for the busco package. The version number has been changed from 5.7.1 to 5.8.0, and the SHA256 checksum has been updated from d57066b68d533f0b86518653430ba47b748ef14db56d2a992601d3e26096cad6 to 201218349224d35b4ad2de345505710e7778904e0f1158874b2a4d0cb2dce1ed. Additionally, the build number has been modified from 1 to 0. The run dependencies section has been updated to include the new package fonts-conda-ecosystem. Changes to the maintainer list have been made, with silask and matsepp being removed while berkelem remains as a maintainer. Overall, the changes consist of version and checksum updates, as well as minor adjustments to the build number and maintainer information.

Possibly related PRs

Suggested labels

autobump, new version


📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between b7fe7ea and e8d6722.

📒 Files selected for processing (1)
  • recipes/busco/meta.yaml (1 hunks)
🧰 Additional context used
🔇 Additional comments (5)
recipes/busco/meta.yaml (5)

2-2: Version update looks good.

The version has been correctly updated to 5.8.0, which aligns with the PR objective.


10-10: Build number reset is correct.

The build number has been appropriately reset to 0 for the new version. This follows best practices for Conda recipe versioning.


Line range hint 53-53: Clarify the addition of 'fonts-conda-ecosystem' dependency.

A new run dependency 'fonts-conda-ecosystem' has been added. Could you please explain why this dependency is necessary for BUSCO v5.8.0? This information would be helpful for understanding the changes in the new version.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


Line range hint 86-86: Confirm the changes to the maintainer list.

The maintainer list has been updated, removing 'silask' and 'matsepp'. Could you please confirm if this change is intentional and approved by the removed maintainers? It's important to ensure that the maintainer list is kept up-to-date with the consent of all parties involved.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


3-3: Verify the SHA256 checksum.

The SHA256 checksum has been updated, which is necessary for the new version. However, it's crucial to ensure that this checksum is correct for BUSCO v5.8.0.

To verify the checksum, you can run the following script:


Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@mencian mencian merged commit b3c5cd5 into bioconda:master Oct 11, 2024
7 checks passed
@berkelem
Copy link
Contributor Author

Thanks @mencian !

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
please review & merge set to ask for merge
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants