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Update agfusion to 1.4.3 #51041

Merged
merged 1 commit into from
Sep 30, 2024
Merged

Update agfusion to 1.4.3 #51041

merged 1 commit into from
Sep 30, 2024

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@BiocondaBot BiocondaBot commented Sep 30, 2024

Update agfusion: 1.4.11.4.3

install with bioconda Conda

Info Link or Description
Recipe recipes/agfusion (click to view/edit other files)
Summary Python package to annotate and visualize gene fusions.
Home https://github.com/murphycj/AGFusion
Releases https://pypi.org/pypi/agfusion/json

This pull request was automatically generated (see docs).

Summary by CodeRabbit

  • New Features
    • Updated the agfusion package to version 1.4.3, which may include bug fixes and enhancements.
  • Chores
    • Updated the package source URL to reflect the new version.

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Sep 30, 2024
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coderabbitai bot commented Sep 30, 2024

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the agfusion package. The version number is increased from "1.4.1" to "1.4.3", and the SHA256 checksum is modified to match the new version. Additionally, the source URL for the package has been updated accordingly. No other changes to the package structure, requirements, or metadata are included.

Changes

File Change Summary
recipes/agfusion/meta.yaml - Version updated from "1.4.1" to "1.4.3"
- SHA256 updated from "fd04591d764deeff69978f9d495c3baf854ccfba27366aa0ae4859ad85ca2c60" to "0fdace7fad64713173cac049af3783bdb3db406d5a6dafd4cc0c1948d0724c8f"
- Source URL updated for the new version

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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
recipes/agfusion/meta.yaml (1)

Dependencies Version Mismatch Detected

There are discrepancies between the setup.py and meta.yaml regarding the versions of matplotlib and pandas:

  • matplotlib:

    • setup.py requires >=1.5.0
    • meta.yaml requires >=3.6.1
  • pandas:

    • setup.py requires >=0.18.1
    • meta.yaml requires >=1.5.1

Please update the setup.py to match the meta.yaml requirements to ensure compatibility.

🔗 Analysis chain

Line range hint 4-50: Verify dependencies and metadata for the new version.

While the version update looks good, it's important to ensure that all dependencies and metadata are still accurate for version 1.4.3. Please verify:

  1. That all dependencies in the requirements section are still compatible with the new version.
  2. That the metadata in the about section (especially the summary and license) is still accurate.
  3. That the run_exports directive in the build section is still appropriate for this version.

To help with this verification, you can run the following script to check for any changes in the package's setup.py or README:

Review the output to ensure that no significant changes require updates to the recipe.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for changes in setup.py and README

# Test: Download the new version and check for changes in setup.py and README
curl -sL https://pypi.io/packages/source/a/agfusion/agfusion-1.4.3.tar.gz | tar -xz -O --wildcards '*/setup.py' '*/README*'

Length of output: 10357

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between c69d1bb and 3e38ae2.

📒 Files selected for processing (1)
  • recipes/agfusion/meta.yaml (1 hunks)
🧰 Additional context used
🪛 yamllint
recipes/agfusion/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (2)
recipes/agfusion/meta.yaml (2)

Line range hint 1-50: Summary of changes and next steps

The changes in this PR are minimal and focused on updating the version from 1.4.1 to 1.4.3 and updating the corresponding SHA256 hash. These changes align with the PR objectives for a version bump.

Next steps:

  1. Verify the SHA256 hash using the provided script.
  2. Check the dependencies and metadata using the second script to ensure they're still accurate for version 1.4.3.
  3. If all verifications pass, this PR is ready to be merged.
🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


1-2: LGTM! Version and SHA256 hash updated correctly.

The version has been updated to 1.4.3 as per the PR objective, and the SHA256 hash has been updated accordingly. These changes are consistent with a standard version bump for the package.

Let's verify the SHA256 hash for the new version:

#!/bin/bash
# Description: Verify the SHA256 hash for agfusion-1.4.3.tar.gz

# Test: Download the package and compute its SHA256 hash
curl -sL https://pypi.io/packages/source/a/agfusion/agfusion-1.4.3.tar.gz | sha256sum

Please compare the output of this script with the SHA256 hash in the recipe to ensure they match.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

@apeltzer apeltzer enabled auto-merge (squash) September 30, 2024 09:45
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2 participants