Update goldrush to 1.2.0

[BiocondaBot]

Update goldrush: 1.1.2 → 1.2.0

Info	Link or Description
Recipe	recipes/goldrush (click to view/edit other files)
Summary	Linear-time de novo long read assembler, from the Bioinformatics Technology Lab
Home	https://github.com/bcgsc/goldrush
Releases
Author	@bcgsc

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the "goldrush" package. It increments the version from "1.1.2" to "1.2.0" and updates the SHA256 checksum to reflect the new version. The previous checksum a502a90f1d3a0039fb6c00485f9de64f6f25b4f92ecdf8f977e7f3cf106e948f has been replaced with 01fe97cdfb2b89d569c543727aeedb82f727bfeaa016cafe7904b0d3fcb68649. No other changes were made to the file's structure or content.

Changes

File Path	Change Summary
recipes/goldrush/meta.yaml	- Version updated from 1.1.2 to 1.2.0 - SHA256 updated from a502a90f1d3a0039fb6c00485f9de64f6f25b4f92ecdf8f977e7f3cf106e948f to 01fe97cdfb2b89d569c543727aeedb82f727bfeaa016cafe7904b0d3fcb68649

Possibly related PRs

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• Update savana to 1.2.2 #51103: Update savana to 1.2.2 - This PR involves an update to the version and SHA256 checksum in the meta.yaml file.
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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between b2c62fd and 4b7c7ca.

📒 Files selected for processing (1)

• recipes/goldrush/meta.yaml (1 hunks)

🔇 Additional comments (3)

recipes/goldrush/meta.yaml (3)

2-2: Version update looks good.

The version has been correctly updated from 1.1.2 to 1.2.0, which aligns with the PR objective.

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10-10: SHA256 checksum has been updated.

The SHA256 checksum has been changed, which is expected when updating to a new version. However, it's important to verify that this new checksum is correct for the 1.2.0 version of the goldrush package.

To verify the checksum, you can run the following script:

#!/bin/bash
# Description: Download the package and verify its SHA256 checksum

# Extract version and checksum from meta.yaml
version=$(grep 'version = ' recipes/goldrush/meta.yaml | cut -d '"' -f 2)
expected_checksum=$(grep 'sha256:' recipes/goldrush/meta.yaml | awk '{print $2}')

# Download the package
curl -L -o goldrush-${version}.tar.xz https://github.com/bcgsc/goldrush/releases/download/${version}/goldrush-${version}.tar.xz

# Compute the actual checksum
actual_checksum=$(sha256sum goldrush-${version}.tar.xz | awk '{print $1}')

# Compare the checksums
if [ "$actual_checksum" = "$expected_checksum" ]; then
    echo "Checksum verification passed."
else
    echo "Checksum verification failed."
    echo "Expected: $expected_checksum"
    echo "Actual: $actual_checksum"
fi

# Clean up
rm goldrush-${version}.tar.xz

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Line range hint 1-62: Consider checking dependencies for the new version.

The version update from 1.1.2 to 1.2.0 might involve changes that require updates to dependencies. While the current configuration looks correct, it may be worth verifying if any dependencies need to be updated for goldrush 1.2.0.

To check for any new or updated dependencies, you can run:

This script will help identify any changes in the project's dependencies between the two versions.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

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