- [MISC] Add tsalo as a BIDS maintainer #597 (tsalo)
- [FIX] Adjust index definition to be nonnegative integer #590 (nicholst)
- [MISC] fix links, make json object links consistent, fix pandoc rendering #587 (sappelhoff)
- [FIX] Fix link in Common principles #583 (tsalo)
- [ENH] Specify how to share cross-talk and fine-calibration for Neuromag/Elekta/MEGIN data #581 (sappelhoff)
- [ENH] Specify echo and run indices are nonnegative integers in schema #578 (tsalo)
- Updating the bep009 with the latest master branch updates #576 (melanieganz)
- [ENH] added PPG as an accepted channel type for EEG, MEG and iEEG #570 (robertoostenveld)
- [INFRA] enable pandoc emojis for the pdf build #562 (sappelhoff)
- [INFRA] Auto adjust table fences before PDF conversion #560 (sebastientourbier)
- [ENH] Support run and acq entities in behavior-only data #556 (tsalo)
- [FIX] Clarify requirement levels for TSV metadata fields #555 (sappelhoff)
- [FIX] Reorganize rec, ce entities, _defacemask #550 (emdupre)
- [FIX] Clarify Upper-casing of Channels.tsv Channel Type #548 (adam2392)
- [ENH] Extend date time information to include optional UTC syntax, warn about FIF requirements #546 (sappelhoff)
- [FIX] clarify that \<physio|stim>.json is REQUIRED #542 (sappelhoff)
- [FIX] Replace all non-breaking spaces with vanilla spaces #536 (nicholst)
- [FIX] Clarify indices are nonnegative integers. #535 (nicholst)
- [FIX] Clarify use of session entity in file names #532 (Moo-Marc)
- [ENH] Add the ability of users to specify an explicit HED.xml schema for validation. #527 (VisLab)
- [FIX] clarify that scans.json is allowed and recommended #523 (sappelhoff)
- [INFRA] add copyright holder to license. #521 (sappelhoff)
- [FIX] clarify XXXCoord* in the coordinate systems appendix #520 (sappelhoff)
- [ENH] Update
beh/
specification to contrast with any neural recordings #515 (effigies) - [Fix] 'segmentation' spelling in 05-derivatives/03-imaging.md #514 (rwblair)
- [FIX] restructure and clarify *_physio/*_stim section #513 (sappelhoff)
- [FIX] clarify file formats in EEG, iEEG #511 (sappelhoff)
- [Fix] Add links and release dates to pre GH changelog, fix formatting #509 (sappelhoff)
- [FIX] Clarify that
acq\_time
inscans.json
refers to first data point acquired #506 (tsalo) - [INFRA] make circle artifact link a GH action, point to pdf #505 (sappelhoff)
- [FIX] Typos in DECISION-MAKING file #504 (tsalo)
- [ENH] Add
Commenting on a PR
to CONTRIBUTING.md #490 (franklin-feingold) - [FIX] clarify MEG empty-room recording naming conventions #480 (sappelhoff)
- [INFRA] Convert entity table to yaml #475 (tsalo)
- [FIX] Recommend SI units formatting to adhere to CMIXF-12 #411 (sappelhoff)
v1.4.0 (2020-06-11)
- REL: v1.4.0 #496 (franklin-feingold)
- [FIX] Clarify language on unsetting a key/value pair #495 (nicholst)
- [ENH] Add RECOMMENDED DatasetType key to dataset description #494 (effigies)
- [ENH] Clarify mask/dseg/probseg in common derivatives #489 (effigies)
- [ENH] Reorganize derivatives #488 (effigies)
- [ENH] BEP028: Provenance #486 (satra)
- [ENH] optionally allow LICENSE file #483 (sappelhoff)
- [INFRA] linkchecker - ignore github pull and tree URLs #477 (yarikoptic)
- [ENH] Allow fractional seconds in scans file datetimes #470 (tsalo)
- [MISC] Maintainers -
Scope
responsibility #467 (franklin-feingold) - [FIX] Align tables in MRI section #465 (sappelhoff)
- [FIX] Drop
\_part-
reference from example, introduce\_split-
entity #460 (sappelhoff) - [FIX] clarify participants tsv+json with examples and recommendations #459 (sappelhoff)
- [FIX] Remove BESA from list of restricted keywords of EEG coordsystems #457 (sappelhoff)
- [INFRA] add steps for release protocol (PDF upload) #455 (sappelhoff)
- [FIX] Add reference to PDF on front page of specification #452 (nicholst)
- [INFRA] Add conditional for link-checking releases #451 (franklin-feingold)
- [FIX] unordered list formatting in BEP018 #449 (sappelhoff)
- REL: 1.3.1-dev #448 (franklin-feingold)
- [FIX] fix inconsistencies for task label between sections #446 (Remi-Gau)
- [FIX] update DECISION-MAKING.md document with new governance #441 (sappelhoff)
- [ENH] Add
res
andden
keywords to indicate resolution of resampled data #301 (oesteban) - [ENH] BEP 003: Common Derivatives #265 (effigies)
- [ENH] Add Glossary of terms/abbreviations used in the specification #152 (yarikoptic)
v1.3.0 (2020-04-14)
- [INFRA] add zenodo badge to README #447 (sappelhoff)
- [MISC] Added contributors from VisLab #444 (VisLab)
- [FIX] Clarify snake_case+CamelCase in TSV+JSON #442 (sappelhoff)
- [FIX] Eliminate web/online-specific language #437 (nicholst)
- [INFRA] ensure build_docs_pdf CircleCI job runs last #436 (sappelhoff)
- REL: v1.3.0 #435 (franklin-feingold)
- [INFRA] Add issue templates for GitHub #434 (sappelhoff)
- [INFRA] Get latest PDF build from CircleCI artifacts #433 (sappelhoff)
- [INFRA] Update release protocol #432 (franklin-feingold)
- [INFRA] add support for building PDF versions of the spec #431 (Arshitha)
- [ENH] Explicitly mention bids-validator and update link #428 (sappelhoff)
- [INFRA] use new bids-maintenance GitHub account to take over automatic work #426 (sappelhoff)
- [FIX] Unify section titles and table-of-contents entries #422 (nicholst)
- [INFRA] add # before heading in CHANGES #419 (sappelhoff)
- [INFRA] fix heading of auto changelog to be a markdown header #417 (sappelhoff)
- REL: 1.3.0-dev #413 (franklin-feingold)
- [ENH] Add OPTIONAL EthicsApprovals field to dataset description #412 (effigies)
- [ENH] BEP 018 - Genetic Information #395 (effigies)
v1.2.2 (2020-02-12)
- [FIX] improve wording on data dictionaries #410 (sappelhoff)
- [MISC] update contributions by CPernet #409 (CPernet)
- Units2ascii #408 (satra)
- REL: v1.2.2 #405 (franklin-feingold)
- [FIX] Fix typos and formatting #404 (alexandreroutier)
- BEP 18 suggestions #398 (effigies)
- [MISC] Add Sébastien Tourbier to contributors #394 (sebastientourbier)
- [FIX] consistent units description between EEG/MEG/iEEG. Clarify (derived) SI units + prefixes #391 (sappelhoff)
- [MISC] moved list of extension proposals to the main BIDS website #389 (robertoostenveld)
- [FIX] Typos and clarifications #386 (apjanke)
- [INFRA] Add watermark to drafts #383 (effigies)
- [MISC] Teon Brooks retiring moderator duties for BEP021 #381 (teonbrooks)
- [FIX] clarify that string is expected for HowToAcknowledge field in dataset_description.json #380 (sappelhoff)
- [MISC] Typo and style #378 (TheChymera)
- [FIX] divide readme into 3 parts #374 (sappelhoff)
- [FIX] Refer to BIDS consistently, instead of "\<Modality>-BIDS" #366 (sappelhoff)
- [FIX] Change recommended anonymization date from 1900 to 1925 #363 (alexrockhill)
- [FIX] Minor fixups of inconsistencies while going through a PDF version #362 (yarikoptic)
- [FIX] specify the derivatives pipeline following #345 #358 (CPernet)
- [FIX] clarify that filters should be specified as object of objects #348 (sappelhoff)
- [FIX] Clarify channels.tsv is RECOMMENDED consistently across ephys #347 (sappelhoff)
- [FIX] Typo fix (contract -> contrast) in events documentation #346 (snastase)
- RM: rm TOC.md - seems no longer pertinent/used #341 (yarikoptic)
- [MISC] Move the PR template to a separate folder and improve contents #338 (jhlegarreta)
- [INFRA] Find npm requirements file in Circle #336 (franklin-feingold)
- ENH: Clarify the position toward non-compliant derivative datasets and files #334 (effigies)
- [ENH] Clarify phenotypic and assessment data in new section #331 (sappelhoff)
- [MISC] add information about continuous integration checks to PR template #330 (sappelhoff)
- [FIX] Fix
Common principles
Key/value files
section level #328 (jhlegarreta) - [INFRA] Set the maximum heading length lint check to
false
#325 (jhlegarreta) - [FIX] Number explicitly all cases in MRI field map section headers #323 (jhlegarreta)
- [FIX] Add SoftwareFilters to EEG sidecar example #322 (Remi-Gau)
- [MISC] Fixing Travis errors with Remark #320 (franklin-feingold)
- [INFRA] Link to doc builds in CI checks #315 (jasmainak)
- [MISC] Add BEP027 - BIDS Execution to BEP list #314 (effigies)
- [FIX] Add CBV and phase to Entity table #312 (tsalo)
- [FIX] Separate out imaging-specific "common derivatives" #310 (effigies)
- [FIX] Revise template-generated coordinate systems #307 (oesteban)
- [FIX] Normalization of template-generated standard spaces #306 (oesteban)
- [ENH] Release protocol notes #304 (franklin-feingold)
- REL: 1.3.0-dev #303 (franklin-feingold)
- [INFRA] Adding contributor appendix sentence to PR template #299 (franklin-feingold)
- [ENH] Added discontinuous datatype for EEG and iEEG #286 (wouterpotters)
- [FIX] Clarify paragraph about custom data types #264 (effigies)
v1.2.1 (2019-08-14)
- Sync rel/1.2.1 to master #302 (franklin-feingold)
- FIX: repair link in anatomical MRI table #297 (sappelhoff)
- [ENH] Clarify requirements in Release Protocol #294 (franklin-feingold)
- [INFRA+FIX] Use linkchecker (from a dedicated docker image) to check all URLs #293 (yarikoptic)
- REL: v1.2.1 #291 (franklin-feingold)
- [ENH] Adding Contributors and updating contributions #284 (franklin-feingold)
- [MISC] update Code of Conduct contact #281 (franklin-feingold)
- [ENH] Update contributing guide and README to make discussion forums easy to find #279 (emdupre)
- [ENH] Starter Kit dropdown menu #278 (franklin-feingold)
- [ENH] BEP Update #277 (franklin-feingold)
- [INFRA] Update pipenv #274 (sappelhoff)
- [INFRA] Transpose the entity table and link to text anchors describing each entity #272 (sappelhoff)
- [ENH] Add Twitter badge to README and link to website to landing page #268 (franklin-feingold)
- [ENH] adding release guidelines #267 (franklin-feingold)
- [FIX] Common principles: Fix filename in inheritance principle #261 (Lestropie)
- [MISC] update modality references #258 (sappelhoff)
- [INFRA] adding logo to RTD #256 (franklin-feingold)
- [INFRA] add footer, replacing mkdocs/material advert with Github link #250 (sappelhoff)
- [MISC] rename logo files, add a README of where they come from, fix favicon #249 (sappelhoff)
- [MISC] updating MEG doc links, manufacturer names, and adding a missing MEG example #248 (sappelhoff)
- [ENH] Add favicon to RTD #246 (franklin-feingold)
- [MISC] Update Authors in BEP025 #241 (josator2)
- [MISC] Document BEPs that are not active anymore, but have not been merged #240 (sappelhoff)
- [FIX] remove ManufacturersAmplifierModelName (again) #236 (robertoostenveld)
- [INFRA] Update release protocol #235 (effigies)
- REL: 1.3.0-dev #234 (effigies)
- [INFRA] Enable version panel for quickly finding previous versions #232 (effigies)
- [FIX] use \<label> for _desc- - not some \<value> + clarify \<value> #224 (yarikoptic)
- [FIX] Clarify Appendix II: The list of licenses only lists examples #222 (sappelhoff)
- [FIX] Trivial column header fix #220 (nicholst)
- [INFRA] Add clarification on merge methods to DECISION_MAKING #217 (sappelhoff)
- [INFRA] Enable permalink urls to appear at (sub)section headings #214 (yarikoptic)
- [INFRA] bump up mkdocs-materials version #211 (sappelhoff)
- [ENH] Various proposed changes to diffusion derivatives #205 (Lestropie)
- [MISC] Fix github username for @chrisgorgo #204 (chrisgorgo)
- [FIX] clarify example 3 in common principles (inheritance) #202 (sappelhoff)
- [MISC] Expand entity table for MEG/EEG/iEEG specific files #198 (sappelhoff)
- [FIX] make iEEG ToC more consistent with MEG and EEG #191 (robertoostenveld)
- [FIX] Clarify use of acq and task parameters in EEG, MEG, and iEEG #188 (sappelhoff)
- [FIX] clarify use of tools for CTF data renaming #187 (sappelhoff)
- [MISC] Add bep006 and bep010 to completed beps and fix links #186 (sappelhoff)
- [FIX] change file for definition of electrical stimulation labels from _electrodes.json to _events.json #185 (ezemikulan)
- [ENH] relax ieeg channel name requirements of letters and numbers only #182 (sappelhoff)
- [FIX] make MEG section headings and ToC consistent to the EEG and iEEG specs #181 (robertoostenveld)
- [FIX] make section headings and ToC consistent between meg and eeg specs #180 (robertoostenveld)
- [MISC] Spelling fixes #179 (DimitriPapadopoulos)
- [ENH] Alternative folder organization for raw, derived, and source data #178 (chrisgorgo)
- [INFRA] Adding instructions for naming PRs #177 (chrisgorgo)
- [MISC] Introducing Stefan Appelhoff as the first Maintainer #176 (chrisgorgo)
- [FIX] Clarify name of "BrainVision" format #175 (JegouA)
- [FIX] Fixes spelling of continuous #171 (emdupre)
- [FIX] Clarify continuous recording metadata fields #167 (effigies)
- [FIX] changed reference of
dcm2nii
todcm2niix
#166 (DimitriPapadopoulos) - [FIX] Removing a leftover file #162 (chrisgorgo)
- [ENH] Derived (processed) MR data #109 (chrisgorgo)
- [FIX] Specify marker file names for KIT data (MEG) #62 (monkeyman192)
- [FIX] Remove father-level for meg filetypes other than BTi/4D data #19 (teonbrooks)
v1.2.0 (2019-03-04)
- REL: v1.2.0 #161 (chrisgorgo)
- [MISC] Adding Dimitri Papadopoulos Orfanos to the list of contributors #157 (DimitriPapadopoulos)
- RF: use "specification" not "protocol" to refer to BIDS #156 (yarikoptic)
- Fix example misalignment #155 (DimitriPapadopoulos)
- Update Pipfile.lock #144 (franklin-feingold)
- [MRG] clarify decimal sep and numerical notation convention #143 (sappelhoff)
- [MRG] clarify encoding of README, CHANGES, TSV, and JSON files #140 (sappelhoff)
- Update site_name and release protocol #137 (franklin-feingold)
- BF: Example for IntendedFor was missing session indicator in the filename #129 (yarikoptic)
- [ENH] Add "_phase" suffix to func datatype for functional phase data #128 (tsalo)
- Update to Release_Protocol.md #126 (franklin-feingold)
- Update tag naming convention #123 (chrisgorgo)
- [MRG] Merge bep006 and bep010 #108 (sappelhoff)
- Adding formal decision-making rules #104 (chrisgorgo)
- [MRG] number of small corrections to the specification #98 (robertoostenveld)
v1.1.2 (2019-01-10)
- REL: v.1.1.2 #121 (chrisgorgo)
- Update 01-contributors.md #120 (oesteban)
- Global fields in data dictionaries #117 (chrisgorgo)
- Propose BEP026 MER #116 (greydongilmore)
- Remove duplicate entries in MEG table #113 (franklin-feingold)
- Propose BEP025 MIDS #110 (josator2)
- repair links #106 (sappelhoff)
- Autogenerate CHANGES.md #103 (franklin-feingold)
- Added contributor information #100 (jgrethe)
- ENH: First(?) good practice recommendation. No excessive overrides in Inheritance principle #99 (yarikoptic)
- adding extensions page #97 (choldgraf)
- Fix up some urls (as detected to be broken/inconsistent #95 (yarikoptic)
- Change BEP numbers to include MRS #94 (Hboni)
- RF harmonize and thus shorten templates etc #93 (yarikoptic)
- put links and some text into README #91 (sappelhoff)
- Add extension proposal in 01-introduction.md #88 (Hboni)
- additional table to recap 'volume acquisition timing' #87 (Remi-Gau)
- Small typo in "scanning sequence" DICOM tag #84 (Remi-Gau)
- Update 01-contributors.md #83 (teonbrooks)
- Added CBV contrast #82 (TheChymera)
- Add CC-BY 4.0 license #81 (KirstieJane)
- Fix Travis break #80 (franklin-feingold)
- ENH: allow _dir for other EPI (func, dwi) sequences #78 (yarikoptic)
- Added appendix to mkdocs and added some internal links #77 (franklin-feingold)
- DOC: added JC Houde as contributor. #76 (jchoude)
- Updated my contributions #75 (nicholst)
- update HED appendix #74 (sappelhoff)
- [MRG] unicode: replace greek mu and omega by micro and ohm signs #73 (sappelhoff)
- Update 01-contributors.md #72 (francopestilli)
- add ce-\<label> for fmri data #70 (dasturge)
- pin pip version #68 (chrisgorgo)
- Fix link in index #46 (chrisgorgo)
- edit contributing md #44 (Park-Patrick)
- Mkdocs configuration and RTD setup #42 (choldgraf)
- Move definitions, compulsory, and raw/derivatives sections to principles #40 (chrisgorgo)
- Remove duplicate section #39 (chrisgorgo)
- mkdocs rendering #36 (chrisgorgo)
- Style consistency #35 (chrisgorgo)
- Renaming files to conform with style guide #34 (chrisgorgo)
- enable travis cache #32 (chrisgorgo)
- FIX - corrected link that is shown for CC0 #31 (robertoostenveld)
- [WIP] added linter integration via travis #30 (chrisgorgo)
- Cleanup #29 (chrisgorgo)
- [MRG] split intro, commons, mr, and meg into folder from specification.md #28 (teonbrooks)
- Add some bids starter kit contributors #27 (KirstieJane)
- Embedded footnotes into text #25 (franklin-feingold)
- Making HED Strategy Guide link prettier #24 (fake-filo)
- Fix/more cleanup #21 (chrisgorgo)
- formatted MEG (8.4) #17 (franklin-feingold)
- small fixes #16 (chrisgorgo)
- Add meg img #14 (sappelhoff)
- [WIP] Cleaning up the specification #13 (chrisgorgo)
- Adding code of conduct #6 (chrisgorgo)
- Renaming the main document #1 (chrisgorgo)
1.1.1 (2018-06-06)
- Improved the MEG landmark coordinates description.
- Replaced
ManufacturersCapModelName
inmeg.json
withCapManufacturer
andCapManufacturersModelName
. - Remove
EEGSamplingFrequency
andManufacturersAmplifierModelName
from themeg.json.
- Improved the behavioral data description.
1.1.0 (2018-04-19)
- Added support for MEG data (merged BEP008)
- Added
SequenceName
field. - Added support for describing events with Hierarchical Event Descriptors [4.3 Task events].
- Added
VolumeTiming
andAcquisitionDuration
fields [4.1 Task (including resting state) imaging data]. - Added
DwellTime
field.
1.0.2 (2017-07-18)
- Added support for high resolution (anatomical) T2star images [4.1 Anatomy imaging data].
- Added support for multiple defacing masks [4.1 Anatomy imaging data].
- Added optional key and metadata field for contrast enhanced structural scans [4.1 Anatomy imaging data]
- Added
DelayTime
field [4.1 Task (including resting state) imaging data]. - Added support for multi echo BOLD data [4.1 Task (including resting state) imaging data].
1.0.1 (2017-03-13)
- Added
InstitutionName
field [4.1 Task (including resting state) imaging data]. - Added
InstitutionAddress
field [4.1 Task (including resting state) imaging data]. - Added
DeviceSerialNumber
field [4.1 Task (including resting state) imaging data]. - Added
NumberOfVolumesDiscardedByUser
andNumberOfVolumesDiscardedByScanner
field [4.1 Task (including resting state) imaging data]. - Added
TotalReadoutTime to
functional images metadata list [4.1 Task (including resting state) imaging data].
- Added T1 Rho maps [4.1 Anatomy imaging data].
- Added support for phenotypic information split into multiple files [3.2 Participant key file].
- Added recommendations for multi site datasets
- Added
SoftwareVersions
- Added
run-<run_index>
to the phase encoding maps. Improved the description. - Added
InversionTime
metadata key. - Clarification on the source vs raw language.
- Added
trial_type
column to the event files. - Added missing
sub-<participant_label>
in behavioral data file names - Added ability to store stimuli files.
- Clarified the language describing allowed subject labels.
- Added quantitative proton density maps.
1.0.0 (2016-06-23)
- Added ability to specify fieldmaps acquired with multiple parameter sets.
- Added ability to have multiple runs of the same fieldmap.
- Added FLASH anatomical images.
- Replaced links to neurolex with explicit DICOM Tags.
- Added sourcedata.
- Added data dictionaries.
- Be more explicit about contents of JSON files for structural (anatomical) scans.
- Renamed
PhaseEncodingDirection
values from "x", "y", "z" to "i", "j", "k" to avoid confusion with FSL parameters - Renamed
SliceEncodingDirection
values from "x", "y", "z" to "i", "j", "k"
- Removed the requirement that TSV files cannot include more than two consecutive spaces.
- Refactor of the definitions sections (copied from the manuscript)
- Make support for uncompressed
.nii
files more explicit. - Added
BIDSVersion
todataset.json
- Remove the statement that
SliceEncodingDirection
is necessary for slice time correction - Change dicom converter recommendation from dcmstack to dcm2nii and dicm2nii following interactions with the community (see moloney/dcmstack#39 and https://github.com/neurolabusc/dcm2niix/issues/4).
- Added section on behavioral experiments with no accompanying MRI acquisition
- Add
_magnitude.nii[.gz]
image for GE type fieldmaps. - Replaced EchoTimeDifference with EchoTime1 and EchoTime2 (SPM toolbox requires this input).
- Added support for single band reference image for DWI.
- Added DatasetDOI field in the dataset description.
- Added description of more metadata fields relevant to DWI fieldmap correction.
- PhaseEncodingDirection is now expressed in "x", "y" etc. instead of "PA" "RL" for DWI scans (so it's the same as BOLD scans)
- Added
rec-<label>
flag to BOLD files to distinguish between different reconstruction algorithms (analogous to anatomical scans). - Added recommendation to use
_physio
suffix for continuous recordings of motion parameters obtained by the scanner side reconstruction algorithms.
- Initial release
* This Change Log was automatically generated by github_changelog_generator