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891 Open 1,166 Closed
891 Open 1,166 Closed
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Issues list

STARsolo and Cellranger (v8) differences in estimating number of cells
#2245 opened Nov 21, 2024 by angelasanzo
Add RG ID to cell barcodes
#2244 opened Nov 20, 2024 by drneavin
How to include the lane index in STARsolo count matrix barcodes.tsv?
#2243 opened Nov 19, 2024 by mkarikom
How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
#2241 opened Nov 14, 2024 by mkarikom
Velocyto question
#2239 opened Nov 13, 2024 by Liripo
1
STARsolo settings for SMART-seq3
#2238 opened Nov 7, 2024 by apredeus
What's the difference between "outSAMstrandField" and "outFilterIntronMotifs RemoveNoncanonical"
#2237 opened Nov 7, 2024 by hungweichen0327
Multi Mapping Loci Meaning
#2236 opened Nov 6, 2024 by mattg478
Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?
#2235 opened Nov 5, 2024 by Vijithkumar2020
Custom refgen generation (scRNA)
#2234 opened Nov 5, 2024 by radiasso
Indexing transcriptome bam file
#2233 opened Nov 2, 2024 by aayushraman
transcriptInfo.tab format
#2232 opened Nov 1, 2024 by starkiller-liuzhiming
Uniquely mapped reads number
#2231 opened Oct 31, 2024 by hamzaaitabbou96
Question about Read Length parameter during reference creation
#2230 opened Oct 27, 2024 by Motoufiq
Overrepresentation of Reads Mapping to Intronic Regions
#2229 opened Oct 23, 2024 by Matthieu-Duot
soloUMIdedup 1MM_Directional_UMItools and 1MM_Directional difference.
#2228 opened Oct 23, 2024 by araboapresyan
Mapping speed of STAR is very different for similar bam
#2227 opened Oct 22, 2024 by dingyaozhang
Corrupt SAM/BAM file due to NULL injected into MD tag with two-pass
#2226 opened Oct 8, 2024 by btownshend
soloType CB_UMI_Complex is incompatible with soloCBwhitelist None
#2225 opened Oct 7, 2024 by aepstein96
Reference genome file download problem
#2224 opened Oct 6, 2024 by FeeFaysalTusar
Add index sequence to Unmapped read FASTQ headers
#2223 opened Oct 3, 2024 by andrewkennard
STARsolo run with --soloType CB_UMI_Complex uses too much memory.
#2222 opened Oct 1, 2024 by brgew
1
Much fewer than expected exons.
#2221 opened Sep 30, 2024 by EvanKomp
--soloType CB_UMI_Complex ,didn't match barcodes or UMIs
#2219 opened Sep 27, 2024 by StardDii
1
--outSAMunmapped Within some reads being lost
#2218 opened Sep 26, 2024 by alexander-e-f-smith
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