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STARsolo settings for SMART-seq3 #2238

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apredeus opened this issue Nov 7, 2024 · 0 comments
Open

STARsolo settings for SMART-seq3 #2238

apredeus opened this issue Nov 7, 2024 · 0 comments

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@apredeus
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apredeus commented Nov 7, 2024

Dear Alex & STAR user community,

I wander if someone has used STARsolo for processing of SMART-seq3 data? I am looking at some fastq files and only a small fraction of the reads seem to have the 11 bp adapter - so I am genuinely confused as to how this should be processed.

Also, is SMART-seq3 supposed to be strand-specific?

Would be helpful for any advice.

-- Alex

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