Release v1.7.0-rc1 · NCI-CGR/GwasQcPipeline

What's Changed

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feat: Add data dictionary for QC_Report to delivery folder (issue #313) by @jaamarks in #317
bugfix: Handle removal of discordant expected replicates (issue #210) by @jaamarks in #319
report: Clarify loci filter precedence in QC_Report.docx (issue #288) by @jaamarks in #320
feat: Improve handling of unexpected replicates (issue #269) by @jaamarks in #322
BCF entry point with intensity and contamination checks using BCF for data_catalog usage. by @rajwanir in #314
bugfix: Convert missing ancestry to Other category for grafpop output (Issue 326) by @carynwillis in #331
BugFix: Handling Chr Y saps and revert to GTC to PED (Issue 308) by @carynwillis in #332
feat: Improve handling of discordant expected replicates (issue #324) by @jaamarks in #327
dependencies: Upgrade Black, Typer, etc (issue #323) by @jaamarks in #325
bugfix: Handle cases when contamination=<NA> (issue #269) by @jaamarks in #333
feat: add max_time_hr option for wall-time allocation (issue #334) by @jaamarks in #335
test: Add skipif decorator to handle CGEMS directory access (issue #336) by @jaamarks in #337
bugfix: Apply max_time_hr to sample_level_ibd rule (issue #334) by @jaamarks in #342
feat: Add max_mem_mb config option to set max memory available (issue #343) by @jaamarks in #344
bugfix: cleaner data handling and improved logic for sample_qc_table.py (issue #324) by @jaamarks in #345

Full Changelog: v1.6.0...v1.7.0-rc1