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Fix modopt version in conda env #156

Merged
merged 15 commits into from
Apr 24, 2021
Merged

Fix modopt version in conda env #156

merged 15 commits into from
Apr 24, 2021

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sfarrens
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sfarrens and others added 15 commits April 14, 2021 16:40
* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples
* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile
* set plug-in and modopt versions for next release

* updated pysap-mri version
Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>
* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env
* updated nosetests to provide XML outputs

* added Docker badge
@sfarrens sfarrens added the clean up small corrections and improvements label Apr 24, 2021
@sfarrens sfarrens self-assigned this Apr 24, 2021
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codecov-commenter commented Apr 24, 2021

Codecov Report

❗ No coverage uploaded for pull request base (master@702e843). Click here to learn what that means.
The diff coverage is n/a.

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@@            Coverage Diff            @@
##             master     #156   +/-   ##
=========================================
  Coverage          ?   61.88%           
=========================================
  Files             ?       30           
  Lines             ?     1658           
  Branches          ?        0           
=========================================
  Hits              ?     1026           
  Misses            ?      632           
  Partials          ?        0           
Flag Coverage Δ
unittests 61.88% <0.00%> (?)

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@sfarrens sfarrens merged commit 529bce6 into master Apr 24, 2021
sfarrens added a commit that referenced this pull request Jun 17, 2021
* Final clean up (#154)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* Continuous Deployment (#155)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* Fix modopt version in conda env (#156)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

* Update environment.yml

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* add sdt flag for c++14

Co-authored-by: Samuel Farrens <[email protected]>
Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
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3 participants