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Release clean up #151

Merged
merged 7 commits into from
Apr 23, 2021
Merged

Release clean up #151

merged 7 commits into from
Apr 23, 2021

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sfarrens
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@sfarrens sfarrens commented Apr 22, 2021

Summary

  • Updated Readme
  • Cleaned up Dockerfile
  • Removed doc requirements
  • Updated .readthedocs.yml to use conda environment

@sfarrens sfarrens added the clean up small corrections and improvements label Apr 22, 2021
@sfarrens sfarrens self-assigned this Apr 22, 2021
@sfarrens sfarrens changed the base branch from master to develop April 22, 2021 17:54
@sfarrens sfarrens marked this pull request as ready for review April 22, 2021 18:54
@sfarrens sfarrens merged commit ac4f96e into CEA-COSMIC:develop Apr 23, 2021
@sfarrens sfarrens deleted the release_clean_up branch April 23, 2021 13:02
@sfarrens sfarrens mentioned this pull request Apr 23, 2021
sfarrens added a commit that referenced this pull request Apr 23, 2021
* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
sfarrens added a commit that referenced this pull request Apr 23, 2021
* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
sfarrens added a commit that referenced this pull request Apr 24, 2021
* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
sfarrens added a commit that referenced this pull request Apr 24, 2021
* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

* Update environment.yml

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
sfarrens added a commit that referenced this pull request Jun 17, 2021
* Final clean up (#154)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* Continuous Deployment (#155)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* Fix modopt version in conda env (#156)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

* Update environment.yml

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

* add sdt flag for c++14

Co-authored-by: Samuel Farrens <[email protected]>
Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>
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