Fix modopt version in conda env

.github/workflows/cd-build.yml

@@ -0,0 +1,43 @@
+name: CD
+
+on:
+  push:
+    branches:
+     - master
+     - main
+
+jobs:
+
+  coverage:
+    name: Deploy Coverage Results
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Set up Conda with Python 3.8
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.8
+          auto-activate-base: false
+
+      - name: Install Package Dependencies
+        shell: bash -l {0}
+        run: |
+          python --version
+          python -m pip install --upgrade pip
+          python -m pip install nose nose-exclude coverage pycodestyle
+
+      - name: Run Tests
+        shell: bash -l {0}
+        run: |
+          python setup.py nosetests
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v1
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          file: coverage.xml
+          flags: unittests

.github/workflows/ci-build.yml

@@ -47,7 +47,7 @@ jobs:
         run: |
           python --version
           python -m pip install --upgrade pip
-          python -m pip install nose nose-exclude coverage coveralls pycodestyle
+          python -m pip install nose nose-exclude coverage pycodestyle
           python -m pip install twine
 
       - name: Run Tests
@@ -62,7 +62,7 @@ jobs:
         uses: actions/upload-artifact@v2
         with:
           name: unit-test-results-${{ matrix.os }}-${{ matrix.python-version }}
-          path: pytest.xml
+          path: nosetests.xml
 
       - name: Run Examples
         continue-on-error: true
@@ -116,7 +116,7 @@ jobs:
         run: |
           python --version
           python -m pip install --upgrade pip
-          python -m pip install nose nose-exclude coverage coveralls pycodestyle
+          python -m pip install nose nose-exclude coverage pycodestyle
 
       - name: Run Tests
         shell: bash -l {0}

README.rst

@@ -1,5 +1,5 @@
 
-|CI|_ |Codecov|_ |Python36|_ |Python37|_ |Python38|_ |Python39|_ |PyPi|_ |Doc|_
+|CI|_ |Codecov|_ |Python36|_ |Python37|_ |Python38|_ |Python39|_ |PyPi|_ |Doc|_ |Docker|_
 
 .. |CI| image:: https://github.com/CEA-COSMIC/pysap/workflows/CI/badge.svg
 .. _CI: https://github.com/CEA-COSMIC/pysap/actions?query=workflow%3ACI
@@ -25,6 +25,9 @@
 .. |Doc| image:: https://readthedocs.org/projects/python-pysap/badge/?version=latest
 .. _Doc: https://python-pysap.readthedocs.io/en/latest/?badge=latest
 
+.. |Docker| image:: https://img.shields.io/docker/cloud/build/ceacosmic/pysap
+.. _Docker: https://hub.docker.com/r/ceacosmic/pysap
+
 PySAP
 ======
 

environment.yml

@@ -10,7 +10,7 @@ dependencies:
   - pip:
     - astropy==4.1
     - joblib==1.0.1
-    - modopt==1.5.0
+    - modopt==1.5.1
     - nibabel==3.2.1
     - numpy==1.19.5
     - progressbar2==3.53.1
@@ -21,3 +21,4 @@ dependencies:
     - scipy==1.5.4
     - sf_tools==2.0.4
     - termcolor==1.1.0
+    - git+https://github.com/AGrigis/pysphinxdoc.git

setup.cfg

@@ -3,6 +3,8 @@ verbosity=2
 nologcapture=0
 cover-package=pysap
 with-coverage=1
+cover-xml=1
+with-xunit=1
 ignore-files=test_examples.py
 
 [build_sphinx]