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ClinVar annotation must escape string #485

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holtgrewe opened this issue Oct 8, 2024 · 0 comments · Fixed by #488
Closed

ClinVar annotation must escape string #485

holtgrewe opened this issue Oct 8, 2024 · 0 comments · Fixed by #488
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@holtgrewe
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Describe the bug
When annoting variant GRCh37:1:145507646:G:A then the VCF info value contains an invalid ";". This must be escaped.

To Reproduce
Steps to reproduce the behavior:

  • Annotate variant GRCh37:1:145507646:G:A.

Expected behavior
INFO value should be escaped.

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fix: bump mehari to escape clinvar output string (#485) varfish-org/varfish-server-worker
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