XDZ:JG.3/JN.1 recombinant (7 seqs, France,USA)

[kevsilva]

JG.3/JN.1 recombinant from France.

Breakpoint between 12,816-13,338.

Three sequences:
EPI_ISL_18842774
EPI_ISL_18800192
EPI_ISL_18800327

usher

[FedeGueli]

Putative query:C1889T, C2334T, G5720A, C23557T,C18894T

[xz-keg]

@AngieHinrichs, this is another recomb in recombinants.tsv that is not added in usher tree,

[AngieHinrichs]

The two EPI_ISL_1880* are in the 2024-01-30 tree. The EPI_ISL_1884* sequence has not been downloaded yet, but should be downloaded tonight and added to the tree tomorrow (2024-02-01).

[FedeGueli]

sorry wrong issue updated.

[FedeGueli]

Likely just a cluster

[xz-keg]

+4 USA, one in April

[FedeGueli]

if C1889T, C2334T, G5720A, C23557T,C18894T is the correct query it is very likely dead

[xz-keg]

Is this one XDZ? @corneliusroemer

[xz-keg]

Seems it is.

[corneliusroemer]

Sound like it yes, based on the 23577

We disagree regarding breakpoints though, I might be wrong

[FedeGueli]

XDZ via cov-lineages/pango-designation@d734b84