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JG.3/JN.1.1+S:T572I recombinant (2 seqs, 2 countries) #1391

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xz-keg opened this issue Feb 21, 2024 · 1 comment
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JG.3/JN.1.1+S:T572I recombinant (2 seqs, 2 countries) #1391

xz-keg opened this issue Feb 21, 2024 · 1 comment
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JN.1 Spike recombinant S:455 S:572

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@xz-keg
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xz-keg commented Feb 21, 2024

A singlet in #991 gets company with another seq in another country, make an issue.

JG.3--JN.1.1+S:T572I(various possible branches)

Breakpoint between 15452 and 15755

image

Additional mutations:
C2141T, G9761T, G10237A, C12754T, G25839T, T29685G

Orf1a:P626S, V3166F
Orf3a: W149C

G25839T from a JN.1.1+S:T572I branch (not JN.1.1.1 for lack of 9142T)
C12754T from a JG.3 branch

C2141T, G9761T, G10237A are private mutations

GISAID query: C12754T,G15451A, T15756A
No. of seqs: 2( France 1 UK 1)

EPI_ISL_18900872, 2024-1-27, France
EPI_ISL_18913379, 2024-1-29, UK

usher

image

Up is #1356
@xz-keg
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xz-keg commented Mar 10, 2024

No new seqs

@xz-keg xz-keg closed this as not planned Won't fix, can't repro, duplicate, stale Mar 10, 2024
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@xz-keg @FedeGueli