JG.3/JN.11 or #1095 recombinant (2 seqs, USA)

[xz-keg]

The 2 seqs are both from NY but from different NY counties and different patients(one aged 92 and the other 1), so propose it.

JG.3--JN.11 or #1095
Breakpoint between 21619 and 21710 (S:16 and S:50)

No additional mutations

GISAID query: C7086T,C21711T,G24872T
No. of seqs: 2(USA-NY)

EPI_ISL_18838324, 2023-12-31
EPI_ISL_18838431, 2024-1-3

usher

[kevsilva]

Hi,

We detected 3 JG.3/JN.1.1 recombinants in France:
EPI_ISL_18842774
EPI_ISL_18800192
EPI_ISL_18800327

However, they have different mutations, especially in ORF1b, so I was not sure to continue in this issue or create a new one.

usher

[FedeGueli]

Hi,

We detected 3 JG.3/JN.1.1 recombinants in France: EPI_ISL_18842774 EPI_ISL_18800192 EPI_ISL_18800327

However, they have different mutations, especially in ORF1b, so I was not sure to continue in this issue or create a new one.

usher

Please propose it in a new issue

[xz-keg]

Hi,

We detected 3 JG.3/JN.1.1 recombinants in France: EPI_ISL_18842774 EPI_ISL_18800192 EPI_ISL_18800327

However, they have different mutations, especially in ORF1b, so I was not sure to continue in this issue or create a new one.

usher

@AngieHinrichs, These French recombs are previously listed in recombinants.tsv but not added to the tree.

@FedeGueli they are separate recombs from this one though. This one is recombinant of JG.3 and JN.11, not JN.1.1.

[FedeGueli]

Hi,
We detected 3 JG.3/JN.1.1 recombinants in France: EPI_ISL_18842774 EPI_ISL_18800192 EPI_ISL_18800327
However, they have different mutations, especially in ORF1b, so I was not sure to continue in this issue or create a new one.
usher

@AngieHinrichs, These French recombs are previously listed in recombinants.tsv but not added to the tree.

@FedeGueli they are separate recombs from this one though. This one is recombinant of JG.3 and JN.11, not JN.1.1.

thank u

[AngieHinrichs]

@AngieHinrichs, These French recombs are previously listed in recombinants.tsv but not added to the tree.

The two EPI_ISL_1880* are in the 2024-01-30 tree. The EPI_ISL_1884* sequence has not been downloaded yet, but should be downloaded tonight and added to the tree tomorrow (2024-02-01). #1356 (comment)

[xz-keg]

No new seqs