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    36 repositories

    • .github

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • foundr

      Public
      Multiparent Founder Study Tools
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • foundrShiny

      Public
      Shiny app tools for foundr package
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • qtl2hot

      Public
      Hot Spot Analysis with Qtl2
      R
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • qtl2

      Public
      QTL analysis software for high-dimensional data and complex cross designs
      R
      •
      GNU General Public License v3.0
      •23•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • metabr

      Public
      Metabolite Data Processing
      R
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • FounderDietStudy

      Public
      R
      •2•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • intermediate

      Public
      small R utility for mediation analysis
      R
      •13•2•0•0•Updated Aug 5, 2024Aug 5, 2024

    • qtl2shiny

      Public
      Shiny app for R/qtl2
      R
      •1•3•1•1•Updated Jul 22, 2024Jul 22, 2024

    • DO_Diet

      Public
      R
      •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • qtl2fst

      Public
      R/qtl2 package using fst to store genotype probabilities
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jul 17, 2024Jul 17, 2024

    • foundrHarmony

      Public
      Harmonize data for foundr analysis and visualization
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • qtl2ggplot

      Public
      Extension of R/qtl2plot to ggplot2
      R
      •
      Other
      •2•5•0•0•Updated Mar 15, 2024Mar 15, 2024

    • modulr

      Public
      Trait Module Creation and Analysis
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • FounderCalciumStudy

      Public
      R
      •2•0•0•0•Updated Feb 23, 2024Feb 23, 2024

    • qtl2mediate

      Public
      Mediation using package qtl2
      HTML
      •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • qtl2pattern

      Public
      Pattern support for R/qtl2
      R
      •1•1•0•0•Updated Nov 6, 2023Nov 6, 2023

    • AttieDOv2

      Public
      R
      •0•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • Tmem68

      Public
      Tmem68 mRNA Data example from Chick et al. 2016
      R
      •0•0•0•0•Updated Jul 2, 2021Jul 2, 2021

    • qtlbim

      Public
      QTL Bayesian Interval Mapping
      R
      •0•1•1•0•Updated Jun 8, 2021Jun 8, 2021

    • qtlnet

      Public
      Infer QTL genetic architecture and causal network for set of correlated traits
      R
      •1•3•1•0•Updated Apr 1, 2020Apr 1, 2020

    • qtlhot

      Public
      QTL hotspot inference
      R
      •1•3•1•0•Updated Mar 2, 2020Mar 2, 2020

    • qtl2rmd

      Public
      Rmarkdown for qtl2 analyses
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 28, 2018Jun 28, 2018

    • CausalMST

      Public
      Causal Model Selection Hypothesis Tests
      R
      •2•0•0•1•Updated May 30, 2018May 30, 2018

    • qtl2feather

      Public
      R/qtl2 package using feather to store genotype probabilities
      R
      •
      GNU General Public License v3.0
      •1•0•0•2•Updated Apr 12, 2018Apr 12, 2018

    • CCSanger

      Public
      Pull Sanger features for CC founder strains
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Nov 29, 2017Nov 29, 2017

    • qtl2biome

      Public
      R/qtl2 package for microbiome data analysis
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 31, 2017Aug 31, 2017

    • PlantSysGen

      Public
      Thailand Plant Systems Genetics Workshop 2017
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jan 23, 2017Jan 23, 2017

    • thailand

      Public
      Thailand Plant Systems Genetics Workshop 2017
      HTML
      •0•0•0•0•Updated Dec 20, 2016Dec 20, 2016

    • Rbiodalliance

      Public
      R wrapper for biodalliance.org
      JavaScript
      •
      MIT License
      •1•1•0•0•Updated Aug 17, 2016Aug 17, 2016