Support repository for Founder Diet Study

See data/ReadMe.md for information on raw data.

See https://data-viz.it.wisc.edu/FounderDietStudy/ app (limited access) for interactive data tool. More information found on Shared Google Drive (limited invitations).

Interactive App

• https://data-viz.it.wisc.edu/FounderDietStudy/: interactive app on RStudio Connect
• app.R: code for app
• foundrDietStudy.R: support code for app
• https://github.com/byandell/foundr: support package for app

Support Rmarkdown Document

• FounderDietStudy_Data.Rmd: Harmonize raw data for further analysis.
• FounderDietStudy.Rmd: initial study of founder diet study
• FounderDietStudy_cor.Rmd: correlation study across founders
• FounderDietExplore.Rmd

Archived Data

Data are archived in ResearchDrive with access via Attie Lab. They include the following:

• RawData
  • Data collated by Mark Keller. Much copied from Founder diet data Google Drive.
• HarmonizedData
  • Beginnings of harmonized data developed by Brian Yandell.

Brian S. Yandell [email protected] 30 January 2023

4 Sep 2024

Founder apps are in transition to new foundr/foundrShiny configuration. As of today, all 3 default connect apps (/Founder*Study) have the new configuration, using the foundrBase branch. Apps /OldFounder*Study use the v1.4 branch of foundr package, which is frozen. Apps /OrigFounder*Study use the main branch of foundr package, and will break when the foundrBase branch is merged back into main.

FounderLiverDietStudy

• https://connect.doit.wisc.edu/FounderLiverDietStudy/
  • ./deployLiverNew 1.5.0 9/4/24
  • connect name deployLiverNew
  • uses foundr branch "foundrBase"
• https://connect.doit.wisc.edu/OldFounderLiverDietStudy/
  • ./deployLiver 1.4.1 9/4/24
  • connect name deployLiver
  • old version
  • uses static foundr branch v1.4
• https://connect.doit.wisc.edu/OrigFounderLiverDietStudy/
  • ./deployLiver 1.4.1 9/4/24
  • connect name deployLiver
  • older version that will die when "foundrBase" is merged
• https://connect.doit.wisc.edu/WorkFounderLiverDietStudy/
  • https://workbench.doit.wisc.edu directory ./data/deployLiver
  • workbench name shinyApp_Liver 6/7/24
  • has liver data but is somehow messed up
    • named Founder Diet Study
    • uses foundrShiny but foundr v1.4

FounderDietStudy

• https://connect.doit.wisc.edu/FounderDietStudy/
  • ./deployNew 1.5.0 9/4/24
  • connect name deployNew
  • uses foundr branch "foundrBase"
• https://connect.doit.wisc.edu/OldFounderDietStudy/
  • ./deploy 1.4.1 9/4/24
  • connect name deploy
  • old version
  • uses static foundr branch v1.4
• https://connect.doit.wisc.edu/OrigFounderDietStudy/
  • ./deploy 1.4.1 5/9/24
  • connect name deploy
  • older version that will die when "foundrBase" is merged

FounderCalciumStudy

• https://connect.doit.wisc.edu/FounderCalciumStudy/
  • ./deployCalcium 1.5.0 9/4/24
  • connect name deployCalcium
  • uses foundr branch "foundrBase"
• https://connect.doit.wisc.edu/OldFounderCalciumStudy/
  • ./deployCalcium 1.4.1 5/9/24
  • connect name deployCalcium
  • older version that will die when "foundrBase" is merged