2.3.2 patch release #703
Merged
2.3.2 patch release #703
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Merge pull request #660 from jfy133/dev
Post-release version bump
Min nf bump
Following issue #652, I would like to propose to explicitly mention that `skip_collapse` turns on paired-end alignment, so that a keyword search in the _parameters_ page of the documentation will reveal the information.
Replace `val` with `path` to correct staging of input files
Replace `val` with `path` to correct staging of input files
Correct line spacing in markdown
Fix mqc retry
Co-authored-by: Thiseas C. Lamnidis <[email protected]>
Fix file staging for print_nuclear_contamination
Document that `skip_collapse` turns on paired-end alignment.
Fix file collision names on sex determination of same library two strand types
Latest changes to prep release
Version bump for patch release
apeltzer
approved these changes
Mar 15, 2021
mashehu
reviewed
Mar 16, 2021
mashehu
reviewed
Mar 16, 2021
Co-authored-by: mashehu <[email protected]>
Co-authored-by: mashehu <[email protected]>
Co-authored-by: mashehu <[email protected]>
mashehu
approved these changes
Mar 16, 2021
|
ignoring that one flaky bam_filtering CI test... |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Pipeline patch release for 2.3.2!
Lots of bugs and some refactoring and a couple of very minor additions:
Biggest changes are:
New contributors: @alexandregilardet & @IdoBar
[Note: hold off final merge until we get PeerJ citation info to update on README 👍 ]
PR checklist
scrape_software_versions.pynf-core lint .).nextflow run . -profile test,docker).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).