Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Make samp_named required and unique instead of source_mat_id #108

Merged
merged 1 commit into from
May 19, 2023
Merged

Make samp_named required and unique instead of source_mat_id #108

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1,697 changes: 815 additions & 882 deletions examples/output/README.md
View file
Open in desktop

Large diffs are not rendered by default.

3 changes: 1 addition & 2 deletions examples/output/SampleData-emsl_data-minimal.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,8 +9,7 @@
"metagenomics",
"metatranscriptomics"
],
"samp_name": "xxx",
"source_mat_id": "x:1"
"samp_name": "xxx"
}
],
"@type": "SampleData"
Expand Down
1 change: 0 additions & 1 deletion examples/output/SampleData-emsl_data-minimal.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,3 @@ emsl_data:
- metagenomics
- metatranscriptomics
samp_name: xxx
source_mat_id: x:1
3 changes: 1 addition & 2 deletions examples/output/SampleData-jgi_mg_data-minimal.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,7 @@
"metatranscriptomics"
],
"dna_cont_well": "C3",
"samp_name": "xxx",
"source_mat_id": "x:1"
"samp_name": "xxx"
}
],
"@type": "SampleData"
Expand Down
1 change: 0 additions & 1 deletion examples/output/SampleData-jgi_mg_data-minimal.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,4 +18,3 @@ jgi_mg_data:
- metatranscriptomics
dna_cont_well: C3
samp_name: xxx
source_mat_id: x:1
3 changes: 1 addition & 2 deletions examples/output/SampleData-sediment-data-minimal.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,7 @@
"geo_loc_name": "USA: Nowhere, Oklahoma",
"lat_lon": "35.211445 -98.464612",
"samp_store_temp": "-80 Celsius",
"samp_name": "a",
"source_mat_id": "x:1"
"samp_name": "a"
}
],
"@type": "SampleData"
Expand Down
1 change: 0 additions & 1 deletion examples/output/SampleData-sediment-data-minimal.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,4 +13,3 @@ sediment_data:
lat_lon: 35.211445 -98.464612
samp_store_temp: -80 Celsius
samp_name: a
source_mat_id: x:1
3 changes: 1 addition & 2 deletions examples/output/SampleData-soil-data-minimal.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -17,8 +17,7 @@
"lat_lon": "35.211445 -98.464612",
"samp_store_temp": "-80 Celsius",
"store_cond": "frozen",
"samp_name": "b",
"source_mat_id": "x:2"
"samp_name": "b"
}
],
"@type": "SampleData"
Expand Down
1 change: 0 additions & 1 deletion examples/output/SampleData-soil-data-minimal.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,4 +15,3 @@ soil_data:
samp_store_temp: -80 Celsius
store_cond: frozen
samp_name: b
source_mat_id: x:2
3 changes: 1 addition & 2 deletions examples/output/SampleData-water-data-minimal.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,7 @@
"env_package": "xyz",
"geo_loc_name": "USA: Crater Lake",
"samp_mat_process": "text [ONTO:000000000]",
"samp_name": "xyz",
"source_mat_id": "x:1"
"samp_name": "xyz"
}
],
"@type": "SampleData"
Expand Down
1 change: 0 additions & 1 deletion examples/output/SampleData-water-data-minimal.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,4 +11,3 @@ water_data:
geo_loc_name: 'USA: Crater Lake'
samp_mat_process: text [ONTO:000000000]
samp_name: xyz
source_mat_id: x:1
Loading