Code

265 inplement cromwell runner#271

Code

Merged

mbthornton-lbl merged 19 commits into252-workflow-automation-berkley-rc1microbiomedata/nmdc_automation:252-workflow-automation-berkley-rc1from 265-inplement-cromwell-runnermicrobiomedata/nmdc_automation:265-inplement-cromwell-runnerCopy head branch name to clipboardOct 14, 2024

+669-164

Commits

Commits on Oct 8, 2024

• add mock_cromwell_api

  mbthornton-lbl

  committed
  d57d143

Commits on Oct 9, 2024

• Merge branch '251-missing-keys-in-workflow-records' into 265-inplement-cromwell-runner

  mbthornton-lbl

  committed
  ff52225

• implement get_job_status method with tests

  mbthornton-lbl

  committed
  c1c80b8

• implement get_job_metadata

  mbthornton-lbl

  committed
  da6acec

• Clean up test fixtures

  mbthornton-lbl

  committed
  a981c0e

Commits on Oct 10, 2024

• reorganize test fixtures

  mbthornton-lbl

  committed
  6a2fe30

• Merge branch '252-workflow-automation-berkley-rc1' into 265-inplement-cromwell-runner

  mbthornton-lbl

  committed
  4350e66

• add job_id setter and clean up unused fixture

  mbthornton-lbl

  committed
  c2fcd90

• add test for fetch_release_file

  mbthornton-lbl

  committed
  2dddc24

• Merge branch '252-workflow-automation-berkley-rc1' into 265-inplement-cromwell-runner

  mbthornton-lbl

  committed
  e5e910b

• add fetch_release)file and unit test

  mbthornton-lbl

  committed
  eb68d1f

• add additional unit tests for fetch_release_file

  mbthornton-lbl

  committed
  a0daf87

Commits on Oct 11, 2024

• add generate_inputs and workflow_labels helper functions with test

  mbthornton-lbl

  committed
  da8bec7

• add generate_submission_files function with test

  mbthornton-lbl

  committed
  c7dd32d

• add unit test

  mbthornton-lbl

  committed
  0aa85ae

• patch watcher test with cromwell URL response

  mbthornton-lbl

  committed
  0a6e1d8

Commits on Oct 14, 2024

• Update tests and test fixtures

  mbthornton-lbl

  committed
  7ece6cc

• Add test for watcher

  mbthornton-lbl

  committed
  62f067d

• reformatted and added doc strings

  mbthornton-lbl

  committed
  ae9b270