Change runMetaMS to runMetaMSGCMS

microbiomedata · Sep 23, 2024 · d676436 · d676436
1 parent 773c10b
commit d676436
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Showing 2 changed files with 13 additions and 13 deletions.
diff --git a/wdl/metaMS_gcms.wdl b/wdl/metaMS_gcms.wdl
@@ -1,16 +1,16 @@
 version 1.0
 
 workflow gcmsMetabolomics {
-    call runMetaMS
+    call runMetaMSGCMS
 
     output {
-        String out = runMetaMS.out
-        File output_file = runMetaMS.output_file
-        File output_metafile = runMetaMS.output_metafile
+        String out = runMetaMSGCMS.out
+        File output_file = runMetaMSGCMS.output_file
+        File output_metafile = runMetaMSGCMS.output_metafile
     }
 }
 
-task runMetaMS {
+task runMetaMSGCMS {
     input {
         Array[File] file_paths
         File calibration_file_path

diff --git a/wdl/metams_input_gcms.json b/wdl/metams_input_gcms.json
@@ -1,15 +1,15 @@
 {
-        "gcmsMetabolomics.runMetaMS.file_paths": [
+        "gcmsMetabolomics.runMetaMSGCMS.file_paths": [
         "./data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf",
         "./data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf"
     ],
 
-    "gcmsMetabolomics.runMetaMS.calibration_file_path": "./data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf",
-    "gcmsMetabolomics.runMetaMS.output_directory": "test_output",
-    "gcmsMetabolomics.runMetaMS.output_filename": "test_dataset",
-    "gcmsMetabolomics.runMetaMS.output_type": "csv",
-    "gcmsMetabolomics.runMetaMS.corems_toml_path": "./configuration/corems.toml",
-    "gcmsMetabolomics.runMetaMS.nmdc_metadata_path": "./configuration/nmdc_metadata.json",
-    "gcmsMetabolomics.runMetaMS.jobs_count": 4
+    "gcmsMetabolomics.runMetaMSGCMS.calibration_file_path": "./data/raw_data/GCMS_FAMES_01_GCMS-01_20191023.cdf",
+    "gcmsMetabolomics.runMetaMSGCMS.output_directory": "test_output",
+    "gcmsMetabolomics.runMetaMSGCMS.output_filename": "test_dataset",
+    "gcmsMetabolomics.runMetaMSGCMS.output_type": "csv",
+    "gcmsMetabolomics.runMetaMSGCMS.corems_toml_path": "./configuration/corems.toml",
+    "gcmsMetabolomics.runMetaMSGCMS.nmdc_metadata_path": "./configuration/nmdc_metadata.json",
+    "gcmsMetabolomics.runMetaMSGCMS.jobs_count": 4
 
 }