Change input json for test to specify that it is for gcms

microbiomedata · Sep 23, 2024 · 773c10b · 773c10b
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diff --git a/.github/workflows/wdl_checker.yml b/.github/workflows/wdl_checker.yml
@@ -25,4 +25,4 @@ jobs:
     - name: Run MiniWDL
       run: |
         # Add the commands to run your MiniWDL workflow
-        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input.json --verbose --no-cache --copy-input-files
+        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
diff --git a/README.md b/README.md
@@ -120,7 +120,7 @@ pip3 install miniwdl
 
 Call:
 ```bash
-miniwdl run wdl/metaMS.wdl -i wdl/metams_input.json --verbose --no-cache --copy-input-files
+miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
 ```
 ## MetaMS Docker Container
 

diff --git a/_LAST b/_LAST
@@ -0,0 +1 @@
+20240923_162131_gcmsMetabolomics
diff --git a/wdl/metams_input.json → wdl/metams_input_gcms.json b/wdl/metams_input.json → wdl/metams_input_gcms.json
-Original file line number
+Diff line change
@@ Expand Up / @@ -120,7 +120,7 @@ pip3 install miniwdl @@
     Call:
     ```bash
-    miniwdl run wdl/metaMS.wdl -i wdl/metams_input.json --verbose --no-cache --copy-input-files
+    miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
     ```
     ## MetaMS Docker Container
@@ Expand Down @@