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39 Open 127 Closed
39 Open 127 Closed
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Issues list

Unable to view files using loompy
#187 opened Jul 30, 2024 by kylimcqueen
Release version that doesn’t throw SyntaxWarning
#183 opened Mar 14, 2024 by flying-sheep
loom contains significantly less cells than those in "filtered_feature_bc_matrix"
#182 opened Jan 5, 2024 by Lei-Guo
libc++abi: terminating with uncaught exception of type std::length_error: vector/ using loompy to make loom file from fastq
#177 opened Nov 30, 2022 by TM9013
Question: fast sparse matrix loading
#173 opened Jul 6, 2022 by sjfleming
LoomR and ScopeLoomR can read these two files, but Loompy reports that it cannot read them.
#171 opened Apr 25, 2022 by sunjiahe-hub
h5py 3 requires file mode
#169 opened Mar 31, 2022 by rekado
1
Missing 'Vega translation ID'
#168 opened Feb 7, 2022 by juhjeong
2
combine loom issue
#167 opened Feb 4, 2022 by yfstkchy
add_loom function in loompy.py depends on internally deprecated batch_scan_layers
#166 opened Jan 28, 2022 by mcarrara-bioinfo
1
the mismatch of reutrn type from get_loom_spec_version
#165 opened Dec 22, 2021 by ygidtu
AssertionError: The two arrays are not matching
#163 opened Dec 16, 2021 by homomedicus
1
Should we pay attention to Warning: no ambient RNA beads were found; maybe sample had too few cells?
#162 opened Nov 20, 2021 by denvercal1234GitHub
3
Does loompy take into account mitochrondial genes in loom file output?
#161 opened Nov 18, 2021 by denvercal1234GitHub
Metadata.tab file for multiome datasets (snRNA+ATAC-Seq)
#159 opened Sep 24, 2021 by alevax
1
I meet tbb error today, is there any solution?
#156 opened Jul 6, 2021 by HelloWorldLTY
Saving IndexError: list index out of range
#155 opened Jun 7, 2021 by abearab
3
Error with read_loom
#154 opened Jun 5, 2021 by srjacobson
Building genome index for non-10X platform
#153 opened May 5, 2021 by andrewjkwok
1
Convert older Loom files to newer specification
#152 opened Apr 29, 2021 by chenu
1
the INF and NaN can not be save by loom format file
#151 opened Apr 7, 2021 by honghh2018
1
[python 3.8] UnicodeDecodeError: 'ascii' codec can't decode byte 0xce in position 45: ordinal not in range(128)
#149 opened Mar 26, 2021 by csgroen
5
Error in loading bus records
#148 opened Feb 26, 2021 by maddemaddi
h5py 3.1.0 breaks fancy indexing
#147 opened Jan 20, 2021 by camiel-m
1
Running Velocyto Command Error
#146 opened Jan 15, 2021 by josinejansen
1
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