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Those files have a col_edges and not col_graphs which is what the SeuratDisk library needs to convert the loom file.
Is there something within Loompy that I can use to convert the older loom files to the new specifications.
I tried doing loompy.combine and the new file works fine within Seurat, but I'm unclear whether this process is modifying the data in any detrimental way?
Thanks!
The text was updated successfully, but these errors were encountered:
Hi All,
I am attempting to analyze some loom files with Seurat. The loom file in question is: https://storage.googleapis.com/linnarsson-lab-loom/l1_pons.loom
Those files have a col_edges and not col_graphs which is what the SeuratDisk library needs to convert the loom file.
Is there something within Loompy that I can use to convert the older loom files to the new specifications.
I tried doing loompy.combine and the new file works fine within Seurat, but I'm unclear whether this process is modifying the data in any detrimental way?
Thanks!
The text was updated successfully, but these errors were encountered: