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Convert older Loom files to newer specification #152

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chenu opened this issue Apr 29, 2021 · 1 comment
Open

Convert older Loom files to newer specification #152

chenu opened this issue Apr 29, 2021 · 1 comment

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@chenu
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chenu commented Apr 29, 2021

Hi All,
I am attempting to analyze some loom files with Seurat. The loom file in question is: https://storage.googleapis.com/linnarsson-lab-loom/l1_pons.loom

Those files have a col_edges and not col_graphs which is what the SeuratDisk library needs to convert the loom file.

Is there something within Loompy that I can use to convert the older loom files to the new specifications.

I tried doing loompy.combine and the new file works fine within Seurat, but I'm unclear whether this process is modifying the data in any detrimental way?

Thanks!

@slinnarsson
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That should be the way to do it

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