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23 Open 37 Closed
23 Open 37 Closed
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Issues list

Issue with convert prodigal output to standard GFF3
#83 opened Oct 20, 2024 by jjuradoc
@jorvis
4
product info not printout in tbl bug
#74 opened Aug 26, 2021 by shuhailaMSR
@jorvis
2
Formatting Issue? bug
#72 opened May 11, 2021 by remiketchum
@jorvis
2
Incorrect parent features from convert_tRNAScanSE_to_gff3.pl
#70 opened Dec 28, 2020 by 14zac2
2
Conda based install enhancement
#65 opened Sep 27, 2019 by nhartwic
2
[convert_genbank_to_gff3.py] key_error: locus_tag bug
#60 opened May 13, 2019 by Piplopp
@jorvis
5
Exclude mRNA features in bacterial TBL exports
#56 opened Jun 25, 2018 by jorvis
convert_gff3_to_ncbi_tbl
#54 opened Feb 13, 2018 by bernt-matthias
5
Augustus conversion failing
#51 opened Jan 10, 2018 by jorvis
@jorvis
5
Script needed for assembly evaluation enhancement
#36 opened Jan 29, 2016 by jorvis
1
biocodeutils.py add error output mRNA ID
#30 opened Nov 20, 2014 by ktretina
correct_gff_feature_order.pl misplacing ##FASTA
#29 opened Nov 20, 2014 by ktretina
convert_gff3_to_gbk.py, convert sequences with no annotation
#26 opened Jul 15, 2014 by jonathancrabtree
GFF3 validator enhancement
#17 opened Jun 13, 2014 by ktretina
1
convert_gff3_to_gbk.py with no embedded FASTA bug
#15 opened Jun 12, 2014 by ktretina
Model UTRs explicitly enhancement
#14 opened Jun 5, 2014 by jorvis
@jorvis
2
Annotation parsing file output options enhancement
#13 opened May 29, 2014 by mchibucos
The biothings module needs to support multiple parentage enhancement
#12 opened Mar 2, 2014 by jorvis
Add motif predictions to parse_ergatis_euk_functional_pipeline.py
#11 opened Feb 18, 2014 by mchibucos
gff/write_fasta_from_gff.pl mistranslates some Augustus -> GFF3 output bug
#10 opened Feb 13, 2014 by jorvis
report_gff3_statistics.py unsupported operand type(s) error bug
#9 opened Feb 7, 2014 by mchibucos
@jorvis
Needed: Speed-optimized FASTA statistics script enhancement
#7 opened Dec 29, 2013 by jorvis
Needed: Speed-optimized FASTQ statistics script enhancement
#6 opened Dec 29, 2013 by jorvis
1
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