Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

biocodeutils.py add error output mRNA ID #30

Open
ktretina opened this issue Nov 20, 2014 · 0 comments
Open

biocodeutils.py add error output mRNA ID #30

ktretina opened this issue Nov 20, 2014 · 0 comments

Comments

@ktretina
Copy link
Collaborator

When the biocodeutils function called "translate" finds an unknown codon, it currently will deal with it like this:

print("WARN: Encountered unknown codon during translation: {0}".format(seq[x:x+3]))

Could you please add the mRNA ID to this output? I think you'll have to add that to the function input. This will help when trying to track down the sequences with this issue.

Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant