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convert_gff3_to_gbk.py with no embedded FASTA #15

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ktretina opened this issue Jun 12, 2014 · 0 comments

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bug

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ktretina commented Jun 12, 2014

convert_gff3_to_gbk.py currently does not support GFF3 files without embedded FASTA sequences. Here is the error that I got:

"raise Exception("ERROR: CDS.get_residues() requested but its molecule {0} has no stored residues".format(mol.id))"

I guess the FASTA could be passed through a command line option when running the file.

ktretina added the bug label

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