Changes 4

[alexvpickering]

Description

Details

URL to issue

N/A

Link to staging deployment URL (or set N/A)

N/A

Links to any PRs or resources related to this PR

#834
hms-dbmi-cellenics/api#433
hms-dbmi-cellenics/pipeline#302
hms-dbmi-cellenics/worker#304

Integration test branch

master

Merge checklist

Your changes will be ready for merging after all of the steps below have been completed.

Code updates

Have best practices and ongoing refactors being observed in this PR

• Migrated any selector / reducer used to the new format.
• All new dependency licenses have been checked for compatibility.

Manual/unit testing

• Tested changes using InfraMock locally or no tests required for change, e.g. Kubernetes chart updates.
• Validated that current unit tests for code work as expected and are sufficient for code coverage or no unit tests required for change, e.g. documentation update.
• Unit tests written or no unit tests required for change, e.g. documentation update.

Integration testing

You must check the box below to run integration tests on the latest commit on your PR branch.
Integration tests have to pass before the PR can be merged. Without checking the box, your PR
will not pass the required status checks for merging.

• Started end-to-end tests on the latest commit.

Documentation updates

• Relevant Github READMEs updated or no GitHub README updates required.
• Relevant Wiki pages created/updated or no Wiki updates required.

Optional

• Staging environment is unstaged before merging.
• Photo of a cute animal attached to this PR.

[github-actions]

📦 Next.js Bundle Analysis for ui

This analysis was generated by the Next.js Bundle Analysis action. 🤖

⚠️ Global Bundle Size Increased

Page	Size (compressed)
global	599.26 KB (🟡 +1.15 KB)

Details

The global bundle is the javascript bundle that loads alongside every page. It is in its own category because its impact is much higher - an increase to its size means that every page on your website loads slower, and a decrease means every page loads faster.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

If you want further insight into what is behind the changes, give @next/bundle-analyzer a try!

New Page Added

The following page was added to the bundle from the code in this PR:

Page	Size (compressed)	First Load
/experiments/[experimentId]/plots-and-tables/batch-differential-expression	80.56 KB	679.83 KB

Fifteen Pages Changed Size

The following pages changed size from the code in this PR compared to its base branch:

Page	Size (compressed)	First Load
/data-management	252.29 KB (🟡 +701 B)	851.55 KB
/experiments/[experimentId]/data-exploration	615.89 KB (🟢 -3.26 KB)	1.19 MB
/experiments/[experimentId]/data-processing	562.45 KB (🟢 -163 B)	1.13 MB
/experiments/[experimentId]/plots-and-tables	15.45 KB (🟡 +76 B)	614.71 KB
/experiments/[experimentId]/plots-and-tables/dot-plot	574.15 KB (🟢 -1.06 KB)	1.15 MB
/experiments/[experimentId]/plots-and-tables/embedding-categorical	519.63 KB (🟢 -754 B)	1.09 MB
/experiments/[experimentId]/plots-and-tables/embedding-continuous	567.67 KB (🟢 -923 B)	1.14 MB
/experiments/[experimentId]/plots-and-tables/frequency	516.99 KB (🟢 -2.16 KB)	1.09 MB
/experiments/[experimentId]/plots-and-tables/marker-heatmap	671.3 KB (🟢 -3.62 KB)	1.24 MB
/experiments/[experimentId]/plots-and-tables/normalized-matrix	181.58 KB (🟢 -3.53 KB)	780.84 KB
/experiments/[experimentId]/plots-and-tables/trajectory-analysis	523.37 KB (🟢 -378 B)	1.1 MB
/experiments/[experimentId]/plots-and-tables/violin	597.22 KB (🟢 -520 B)	1.17 MB
/experiments/[experimentId]/plots-and-tables/volcano	524.17 KB (🟡 +46 B)	1.1 MB
/repository	103.26 KB (🟢 -85 B)	702.53 KB
/settings/profile	30.19 KB (🟡 +316 B)	629.45 KB

Details

Only the gzipped size is provided here based on an expert tip.

First Load is the size of the global bundle plus the bundle for the individual page. If a user were to show up to your website and land on a given page, the first load size represents the amount of javascript that user would need to download. If next/link is used, subsequent page loads would only need to download that page's bundle (the number in the "Size" column), since the global bundle has already been downloaded.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

Next to the size is how much the size has increased or decreased compared with the base branch of this PR. If this percentage has increased by 20% or more, there will be a red status indicator applied, indicating that special attention should be given to this.

[github-actions]

📦 Next.js Bundle Analysis for ui

This analysis was generated by the Next.js Bundle Analysis action. 🤖

⚠️ Global Bundle Size Increased

Page	Size (compressed)
global	599.26 KB (🟡 +1.15 KB)

Details

The global bundle is the javascript bundle that loads alongside every page. It is in its own category because its impact is much higher - an increase to its size means that every page on your website loads slower, and a decrease means every page loads faster.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

If you want further insight into what is behind the changes, give @next/bundle-analyzer a try!

New Page Added

The following page was added to the bundle from the code in this PR:

Page	Size (compressed)	First Load
/experiments/[experimentId]/plots-and-tables/batch-differential-expression	80.56 KB	679.83 KB

Fifteen Pages Changed Size

The following pages changed size from the code in this PR compared to its base branch:

Page	Size (compressed)	First Load
/data-management	252.3 KB (🟡 +711 B)	851.56 KB
/experiments/[experimentId]/data-exploration	615.89 KB (🟢 -3.26 KB)	1.19 MB
/experiments/[experimentId]/data-processing	562.45 KB (🟢 -163 B)	1.13 MB
/experiments/[experimentId]/plots-and-tables	15.45 KB (🟡 +76 B)	614.71 KB
/experiments/[experimentId]/plots-and-tables/dot-plot	574.15 KB (🟢 -1.06 KB)	1.15 MB
/experiments/[experimentId]/plots-and-tables/embedding-categorical	519.63 KB (🟢 -754 B)	1.09 MB
/experiments/[experimentId]/plots-and-tables/embedding-continuous	567.67 KB (🟢 -923 B)	1.14 MB
/experiments/[experimentId]/plots-and-tables/frequency	516.99 KB (🟢 -2.16 KB)	1.09 MB
/experiments/[experimentId]/plots-and-tables/marker-heatmap	671.3 KB (🟢 -3.62 KB)	1.24 MB
/experiments/[experimentId]/plots-and-tables/normalized-matrix	181.58 KB (🟢 -3.53 KB)	780.84 KB
/experiments/[experimentId]/plots-and-tables/trajectory-analysis	523.38 KB (🟢 -369 B)	1.1 MB
/experiments/[experimentId]/plots-and-tables/violin	597.22 KB (🟢 -520 B)	1.17 MB
/experiments/[experimentId]/plots-and-tables/volcano	524.17 KB (🟡 +46 B)	1.1 MB
/repository	103.26 KB (🟢 -85 B)	702.53 KB
/settings/profile	30.19 KB (🟡 +316 B)	629.45 KB

Details

Only the gzipped size is provided here based on an expert tip.

First Load is the size of the global bundle plus the bundle for the individual page. If a user were to show up to your website and land on a given page, the first load size represents the amount of javascript that user would need to download. If next/link is used, subsequent page loads would only need to download that page's bundle (the number in the "Size" column), since the global bundle has already been downloaded.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

Next to the size is how much the size has increased or decreased compared with the base branch of this PR. If this percentage has increased by 20% or more, there will be a red status indicator applied, indicating that special attention should be given to this.

[github-actions]

📦 Next.js Bundle Analysis for ui

This analysis was generated by the Next.js Bundle Analysis action. 🤖

⚠️ Global Bundle Size Increased

Page	Size (compressed)
global	599.26 KB (🟡 +1.15 KB)

Details

The global bundle is the javascript bundle that loads alongside every page. It is in its own category because its impact is much higher - an increase to its size means that every page on your website loads slower, and a decrease means every page loads faster.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

If you want further insight into what is behind the changes, give @next/bundle-analyzer a try!

New Page Added

The following page was added to the bundle from the code in this PR:

Page	Size (compressed)	First Load
/experiments/[experimentId]/plots-and-tables/batch-differential-expression	80.56 KB	679.83 KB

Fifteen Pages Changed Size

The following pages changed size from the code in this PR compared to its base branch:

Page	Size (compressed)	First Load
/data-management	252.3 KB (🟡 +711 B)	851.56 KB
/experiments/[experimentId]/data-exploration	615.89 KB (🟢 -3.26 KB)	1.19 MB
/experiments/[experimentId]/data-processing	562.45 KB (🟢 -163 B)	1.13 MB
/experiments/[experimentId]/plots-and-tables	15.45 KB (🟡 +76 B)	614.71 KB
/experiments/[experimentId]/plots-and-tables/dot-plot	574.15 KB (🟢 -1.06 KB)	1.15 MB
/experiments/[experimentId]/plots-and-tables/embedding-categorical	519.63 KB (🟢 -754 B)	1.09 MB
/experiments/[experimentId]/plots-and-tables/embedding-continuous	567.67 KB (🟢 -923 B)	1.14 MB
/experiments/[experimentId]/plots-and-tables/frequency	516.99 KB (🟢 -2.16 KB)	1.09 MB
/experiments/[experimentId]/plots-and-tables/marker-heatmap	671.3 KB (🟢 -3.62 KB)	1.24 MB
/experiments/[experimentId]/plots-and-tables/normalized-matrix	181.58 KB (🟢 -3.53 KB)	780.84 KB
/experiments/[experimentId]/plots-and-tables/trajectory-analysis	523.38 KB (🟢 -369 B)	1.1 MB
/experiments/[experimentId]/plots-and-tables/violin	597.22 KB (🟢 -520 B)	1.17 MB
/experiments/[experimentId]/plots-and-tables/volcano	524.17 KB (🟡 +46 B)	1.1 MB
/repository	103.26 KB (🟢 -85 B)	702.53 KB
/settings/profile	30.19 KB (🟡 +316 B)	629.45 KB

Details

Only the gzipped size is provided here based on an expert tip.

First Load is the size of the global bundle plus the bundle for the individual page. If a user were to show up to your website and land on a given page, the first load size represents the amount of javascript that user would need to download. If next/link is used, subsequent page loads would only need to download that page's bundle (the number in the "Size" column), since the global bundle has already been downloaded.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

Next to the size is how much the size has increased or decreased compared with the base branch of this PR. If this percentage has increased by 20% or more, there will be a red status indicator applied, indicating that special attention should be given to this.

[codecov]

Codecov Report

Merging #834 (d2e9d30) into master (00fc0b8) will decrease coverage by 0.10%.
The diff coverage is 84.05%.

❗ Current head d2e9d30 differs from pull request most recent head bd10b4b. Consider uploading reports for the commit bd10b4b to get more accurate results

@@            Coverage Diff             @@
##           master     #834      +/-   ##
==========================================
- Coverage   86.17%   86.08%   -0.10%     
==========================================
  Files         533      540       +7     
  Lines        9811     9986     +175     
  Branches     2063     2108      +45     
==========================================
+ Hits         8455     8596     +141     
- Misses       1312     1343      +31     
- Partials       44       47       +3     

Impacted Files	Coverage Δ
...ial-expression-tool/LaunchPathwayAnalysisModal.jsx	100.00% <ø> (ø)
...ents/data-exploration/embedding/ClusterPopover.jsx	100.00% <ø> (ø)
src/components/data-management/NewProjectModal.jsx	73.80% <0.00%> (+3.35%)	⬆️
src/components/plots/PlotsTablesContainer.jsx	100.00% <ø> (ø)
...components/plots/styling/violin/ViolinControls.jsx	92.30% <ø> (ø)
...fferentialExpression/loadDifferentialExpression.js	88.88% <ø> (-2.29%)	⬇️
src/redux/actions/layout/addWindow.js	87.50% <ø> (-0.74%)	⬇️
src/redux/reducers/componentConfig/initialState.js	100.00% <ø> (ø)
src/utils/constants.js	100.00% <ø> (ø)
...ferentialExpression/getBackgroundExpressedGenes.js	100.00% <ø> (ø)
... and 39 more

... and 1 file with indirect coverage changes

[github-actions]

📦 Next.js Bundle Analysis for ui

This analysis was generated by the Next.js Bundle Analysis action. 🤖

⚠️ Global Bundle Size Increased

Page	Size (compressed)
global	599.26 KB (🟡 +1.15 KB)

Details

The global bundle is the javascript bundle that loads alongside every page. It is in its own category because its impact is much higher - an increase to its size means that every page on your website loads slower, and a decrease means every page loads faster.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

If you want further insight into what is behind the changes, give @next/bundle-analyzer a try!

New Page Added

The following page was added to the bundle from the code in this PR:

Page	Size (compressed)	First Load
/experiments/[experimentId]/plots-and-tables/batch-differential-expression	80.56 KB	679.83 KB

Fifteen Pages Changed Size

The following pages changed size from the code in this PR compared to its base branch:

Page	Size (compressed)	First Load
/data-management	252.3 KB (🟡 +711 B)	851.57 KB
/experiments/[experimentId]/data-exploration	615.89 KB (🟢 -3.26 KB)	1.19 MB
/experiments/[experimentId]/data-processing	562.44 KB (🟢 -172 B)	1.13 MB
/experiments/[experimentId]/plots-and-tables	15.45 KB (🟡 +76 B)	614.71 KB
/experiments/[experimentId]/plots-and-tables/dot-plot	574.15 KB (🟢 -1.06 KB)	1.15 MB
/experiments/[experimentId]/plots-and-tables/embedding-categorical	519.63 KB (🟢 -754 B)	1.09 MB
/experiments/[experimentId]/plots-and-tables/embedding-continuous	567.67 KB (🟢 -923 B)	1.14 MB
/experiments/[experimentId]/plots-and-tables/frequency	516.99 KB (🟢 -2.16 KB)	1.09 MB
/experiments/[experimentId]/plots-and-tables/marker-heatmap	671.3 KB (🟢 -3.62 KB)	1.24 MB
/experiments/[experimentId]/plots-and-tables/normalized-matrix	181.58 KB (🟢 -3.53 KB)	780.84 KB
/experiments/[experimentId]/plots-and-tables/trajectory-analysis	523.38 KB (🟢 -369 B)	1.1 MB
/experiments/[experimentId]/plots-and-tables/violin	597.22 KB (🟢 -520 B)	1.17 MB
/experiments/[experimentId]/plots-and-tables/volcano	524.17 KB (🟡 +46 B)	1.1 MB
/repository	103.26 KB (🟢 -85 B)	702.53 KB
/settings/profile	30.19 KB (🟡 +316 B)	629.45 KB

Details

Only the gzipped size is provided here based on an expert tip.

First Load is the size of the global bundle plus the bundle for the individual page. If a user were to show up to your website and land on a given page, the first load size represents the amount of javascript that user would need to download. If next/link is used, subsequent page loads would only need to download that page's bundle (the number in the "Size" column), since the global bundle has already been downloaded.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

Next to the size is how much the size has increased or decreased compared with the base branch of this PR. If this percentage has increased by 20% or more, there will be a red status indicator applied, indicating that special attention should be given to this.

[github-actions]

📦 Next.js Bundle Analysis for ui

This analysis was generated by the Next.js Bundle Analysis action. 🤖

⚠️ Global Bundle Size Increased

Page	Size (compressed)
global	599.26 KB (🟡 +1.15 KB)

Details

The global bundle is the javascript bundle that loads alongside every page. It is in its own category because its impact is much higher - an increase to its size means that every page on your website loads slower, and a decrease means every page loads faster.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

If you want further insight into what is behind the changes, give @next/bundle-analyzer a try!

New Page Added

The following page was added to the bundle from the code in this PR:

Page	Size (compressed)	First Load
/experiments/[experimentId]/plots-and-tables/batch-differential-expression	80.56 KB	679.83 KB

Fifteen Pages Changed Size

The following pages changed size from the code in this PR compared to its base branch:

Page	Size (compressed)	First Load
/data-management	252.34 KB (🟡 +751 B)	851.6 KB
/experiments/[experimentId]/data-exploration	615.89 KB (🟢 -3.26 KB)	1.19 MB
/experiments/[experimentId]/data-processing	562.44 KB (🟢 -172 B)	1.13 MB
/experiments/[experimentId]/plots-and-tables	15.45 KB (🟡 +76 B)	614.71 KB
/experiments/[experimentId]/plots-and-tables/dot-plot	574.15 KB (🟢 -1.06 KB)	1.15 MB
/experiments/[experimentId]/plots-and-tables/embedding-categorical	519.63 KB (🟢 -754 B)	1.09 MB
/experiments/[experimentId]/plots-and-tables/embedding-continuous	567.67 KB (🟢 -923 B)	1.14 MB
/experiments/[experimentId]/plots-and-tables/frequency	516.99 KB (🟢 -2.16 KB)	1.09 MB
/experiments/[experimentId]/plots-and-tables/marker-heatmap	671.3 KB (🟢 -3.62 KB)	1.24 MB
/experiments/[experimentId]/plots-and-tables/normalized-matrix	181.58 KB (🟢 -3.53 KB)	780.84 KB
/experiments/[experimentId]/plots-and-tables/trajectory-analysis	523.38 KB (🟢 -369 B)	1.1 MB
/experiments/[experimentId]/plots-and-tables/violin	597.22 KB (🟢 -520 B)	1.17 MB
/experiments/[experimentId]/plots-and-tables/volcano	524.17 KB (🟡 +46 B)	1.1 MB
/repository	103.26 KB (🟢 -85 B)	702.53 KB
/settings/profile	30.19 KB (🟡 +316 B)	629.45 KB

Details

Only the gzipped size is provided here based on an expert tip.

First Load is the size of the global bundle plus the bundle for the individual page. If a user were to show up to your website and land on a given page, the first load size represents the amount of javascript that user would need to download. If next/link is used, subsequent page loads would only need to download that page's bundle (the number in the "Size" column), since the global bundle has already been downloaded.

Any third party scripts you have added directly to your app using the <script> tag are not accounted for in this analysis

Next to the size is how much the size has increased or decreased compared with the base branch of this PR. If this percentage has increased by 20% or more, there will be a red status indicator applied, indicating that special attention should be given to this.