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20 Open 29 Closed
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Issues list

Wrong sample names in OutputPerSample bug Something isn't working
#69 opened Jun 26, 2024 by JustinePa
5
Storage usage of PEMA
#65 opened Dec 25, 2023 by savvas-paragkamian
1
time consuming preprocessing enhancement New feature or request
#63 opened Dec 12, 2023 by hariszaf
@hariszaf
Needed updates on "PEMA's output files.md"
#62 opened Nov 15, 2023 by JustinePa
2
When Swarm is chosen for the ITS, the names of the sequences are OtuXX and not ASVXX
#61 opened Nov 10, 2023 by cpavloud
4
16s copy number enhancement New feature or request
#60 opened Oct 31, 2023 by hariszaf
MIDORI updates enhancement New feature or request LW mid priority priority for the LW developers update update a resource used in pema to a more recent version
#56 opened Jun 8, 2023 by kmexter
2
PEMA to create a run summary file FAIR improvement LW high priority priority for the LW developers
#55 opened Jun 8, 2023 by kmexter
2
PEMA Ro-Crate enhancement New feature or request FAIR improvement LW high priority priority for the LW developers provenance Metadata provenance
#54 opened Jun 8, 2023 by kmexter
1
extended final table enhancement New feature or request LW high priority priority for the LW developers
#53 opened May 30, 2023 by kmexter
1
provide pema main data product in a 7-level taxonomy format enhancement New feature or request FAIR improvement LW mid priority priority for the LW developers
#52 opened Apr 17, 2023 by hariszaf
3
Upgrade to crest4 update update a resource used in pema to a more recent version
#51 opened Feb 8, 2023 by hariszaf
@hariszaf
MAPseq alternative classifier for the case of rRNA genes enhancement New feature or request
#44 opened Sep 22, 2022 by hariszaf
@hariszaf
Enhancement: Add option for users to provide a custom adapter file enhancement New feature or request
#40 opened Jun 17, 2022 by natgiot
@hariszaf
1
Enhancement: Add bbmap suite for read preprocessing enhancement New feature or request LW low priority priority for the LW developers
#39 opened Jun 17, 2022 by natgiot
1
Describe formally the pema output enhancement New feature or request FAIR improvement LW high priority priority for the LW developers
#38 opened Apr 7, 2022 by hariszaf
@kmexter
2
Parameters file in a structured format FAIR improvement LW high priority priority for the LW developers
#35 opened Mar 24, 2022 by hariszaf
@kmexter
12
NCBI Taxon ID included in the final_table.tsv file? enhancement New feature or request FAIR improvement LW mid priority priority for the LW developers
#29 opened Nov 26, 2021 by cpavloud
@hariszaf
12
Consider incorporating tools for pseudogene detection enhancement New feature or request LW low priority priority for the LW developers
#27 opened Nov 26, 2021 by cpavloud
3
Add alternative ref db for the case of COI enhancement New feature or request LW low priority priority for the LW developers
#20 opened Nov 23, 2021 by hariszaf
1
ProTip! Exclude everything labeled bug with -label:bug.