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time consuming preprocessing #63

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hariszaf opened this issue Dec 12, 2023 · 0 comments
Open

time consuming preprocessing #63

hariszaf opened this issue Dec 12, 2023 · 0 comments
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enhancement New feature or request

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@hariszaf
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It has been observed that the current setup (we'll call it original approach), can be time consuming.
In cases of hundreds of samples this can be a limiting factor for pema.

An alternative would be to try the fastp tool (fastp preprocessing approach).
@hariszaf hariszaf added the enhancement New feature or request label Dec 12, 2023
@hariszaf hariszaf self-assigned this Dec 12, 2023
hariszaf added a commit that referenced this issue Dec 12, 2023
@hariszaf
enables fastp preprocessing approach #63
692066d
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