bumped version number #155
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name: panaroo-CI | |
on: | |
push: | |
branches: | |
- master | |
- devel | |
pull_request: | |
branches: | |
- master | |
- devel | |
schedule: | |
- cron: '1 1 1 * *' | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [3.7, 3.8, 3.9] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install cd-hit | |
sudo apt-get install mafft | |
wget https://github.com/marbl/Mash/releases/download/v2.2/mash-Linux64-v2.2.tar | |
tar -xvf mash-Linux64-v2.2.tar | |
sudo cp ./mash-Linux64-v2.2/mash /usr/bin/mash | |
python --version | |
pip install -U pip | |
pip install -U pytest | |
wget https://github.com/gtonkinhill/panaroo_test_data/releases/download/v0.0.2/travis_test_data.zip | |
unzip travis_test_data.zip | |
- name: Install | |
run: pip install . | |
- name: Validation Tests | |
run: pytest -W ignore -q --datafolder="${{ github.workspace }}/travis_test_data/" | |