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Firedrake meeting 2020 10 12
Date and time 2020-10-05 15:00UTC (16:00BST)
- Pick Chair and Minuter.
- ALL: (ongoing) triage the open issues and confirm if they are indeed still open (and perhaps provide labels)
- ??: Build master on centos to catch errors
- RK: Report back on quadrature estimation
- KS: Complex merge
Present: David Ham, Connor Ward, Koki Sagiyama, Paul Kelly, Sophia Vorderwuelbecke, Colin Cotter, Lawrence Mitchell, Jack Betteridge, Tom Gregory, Rob Kirby
Apologies: Reuben Nixon-Hill (note new surname!)
Also note that there is an hour's disparity the following week due to Daylight savings differences between different countries.
Finally successfully installed on MacOS, we have working install script now.
Can also import Firedrake, but we need a hack:
export DYLD_INSERT_LIBRARIES=/usr/local/opt/openblas/lib/libblas.dylib:/usr/local/opt/openblas/lib/liblapack.dylib
We should discuss whether we are happy with such a hack.
Conclusion, this is a bodge. Can be fixed by adding correct rpath to offending modules that are loading the incorrect shared libraries. Action JB fix this.
Refactor tsfc/driver.py
- gem construction
- impero_c construction
- kernel construction
etc.
firedrake/tsfc_interface.py
Ex: Jacobian assembly:
all_gem_expr = []
split form according to indices (i, j) -> subform
split subform according to test/trial subspaces (test_sub, trial_sub) -> subsubform
gem_expr = compile_ufl(subsubform, ...)
-> gem_expr = transform(gem_expr, test_sub, trial_sub) (test_sub and trial_sub know right transformation rule, such as rotation)
all_gem_expr.append(gem_expr)
kernel = construct_kernel(all_gem_expr)
Question:
Masked
is still a ufl
class (now defined in Firedrake), but disappear before calling compile_ufl
.
This is convenient when we take action
and derivative
, but not sure if this is a good practice.
KS: Masked is "UFL", but defined in Firedrake.
DH: This is an issue if transforms are called on UFL expressions.
LM: Can we just merge TSFC driver refactroring standalone?
DH: This will allow us to have a hiatus on this work.
Various fixes in FunctionMergeBlock ☑️
KVM elements ☑️
Fix index relabelling in assignments ☑️
Discuss changing meeting to Wednesday early at Gebina Ham's request.
2020-10-21 15:00UTC (16:00BST)
Building locally
Tips
- Running Firedrake tests with different subpackage branches
- Modifying and Rebuilding PETSc and petsc4py
- Vectorisation
- Debugging C kernels with
lldb
on MacOS - Parallel MPI Debugging with
tmux-mpi
,pdb
andgdb
- Parallel MPI Debugging with VSCode and
debugpy
- Modifying generated code
- Kernel profiling with LIKWID
- breakpoint() builtin not working
- Debugging pytest with multiple processing
Developers Notes
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