Scanpy scripts #1
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nh3
commented
Oct 22, 2018
nh3
commented
- I have read the guidelines for bioconda recipes.
- This PR adds a new recipe.
- AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
- This PR updates an existing recipe.
- This PR does something else (explain below).
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Can I change the base to point to the actual bioconda repo? |
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Apparently is not possible. I suggest making the PR from our scanpy-script branch to their master branch directly (unless that we have a procedure that is different somehow?). |
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Yes, that has already been done. Please see #11413. It passed local build test but initially failed CI mulled build test. Adding more dependencies and requiring building against only python=3.6 in meta.yml seemed helped, but somehow new commits doesn't trigger CI test anymore, so I was hoping this PR would trigger one, which apparently doesn't. |
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Jan 29, 2020
Merge PR bioconda#19394, commits were: * increment build * Additionally install bwa.1 manpage * Merge branch 'master' of github.com:jamesabbott/bioconda-recipes into bwa * Merge branch 'master' of github.com:jamesabbott/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of github.com:jamesabbott/bioconda-recipes * Merge pull request #1 from bioconda/master update master to bioconda:master
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Jan 29, 2020
Merge PR bioconda#19494, commits were: * Update meta.yaml * incrementing version and sha256 that may fix clang compiling * incrementing version that may fix clang compiling * changing entry point * Removing license file. It is MIT and on GitHub and in the tarball * Adding a c++ compiler * Adding a compiler * Adding a compiler * Adding an uppercase name * limiting python versions * adding noarch, but not sure if it is correct since we have a C++ script to compile * Adding PhiSpy to conda * Merge pull request #1 from bioconda/master Merging new work
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Jan 29, 2020
Merge PR bioconda#19567, commits were: * modified recipe based on bioconda recommendation * modified recipe based on bioconda recommendation * recipe for module math-matrix * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 29, 2020
Merge PR bioconda#19568, commits were: * added perl-test-most module * modified to run Makefile.PL * modified recipe based on bioconda recommendation * modified recipe based on bioconda recommendation * recipe for module math-matrixreal * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 29, 2020
Merge PR bioconda#19710, commits were: * modified perl env path using sed command * adding perl to exec command * fixed typo in test section * adding exec command in the wrapper script * tried fixing perl env path * Modified test section * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Merge branch 'master' into quantwiz-iq * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * cleaned build.sh script * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * cleaned build.sh script * New tool for Reporter based Isobaric Quantitation using iTRAQ and TMT tags from shotgun proteomics experiments * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 29, 2020
Merge PR bioconda#19753, commits were: * Update meta.yaml * Update build.sh for QuantWiz_IQ Adding escape "\" character to fix short wrapper part in the recipe * Merge pull request #4 from bioconda/master Sync * Merge pull request #3 from bioconda/master merge * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 29, 2020
Merge PR bioconda#19810, commits were: * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Jan 29, 2020
Merge PR bioconda#19905, commits were: * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Jan 29, 2020
Merge PR bioconda#13363, commits were: * Update meta.yaml * Merge branch 'master' into intlim * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of github.com:abotzki/bioconda-recipes * Merge pull request bioconda#6 from bioconda/master merge from bioconda master * some cleanups * build requirements removed and LICENSE.txt added * Merge branch 'master' of github.com:abotzki/bioconda-recipes * Merge pull request bioconda#5 from bioconda/master merge from bioconda master * Merge pull request #4 from bioconda/master merge from bioconda master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into intlim * Merge branch 'master' of github.com:abotzki/bioconda-recipes into intlim * Merge pull request #3 from bioconda/master merge from bioconda * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into intlim * correct URL and license * add missing packages * typo corrected * Merge branch 'master' of github.com:abotzki/bioconda-recipes into intlim * Merge pull request #2 from bioconda/master merge from bioconda master * add initial version of intlim * scikit-learn added * noarch section added * new recipe mofapy * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master merge from master
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Mar 16, 2020
Merge PR bioconda#20792, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Apr 3, 2020
Merge PR bioconda#21021, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Apr 3, 2020
Merge PR bioconda#21057, commits were: * A new recipe for BtToxin_scanner * Merge pull request bioconda#9 from bioconda/master update local * Merge pull request bioconda#7 from bioconda/master update local master * Merge pull request bioconda#5 from bioconda/master update local files * Merge pull request #3 from bioconda/master update local fork * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Apr 23, 2020
Merge PR bioconda#21340, commits were: * bumping to v 0.2.0 * Merge pull request #1 from bioconda/master hgfhdfh * remove not necessary comments * add python version * different command? * fogott the checksum * initial commit negative_training_sampler
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Apr 23, 2020
Merge PR bioconda#21400, commits were: * update sha256sum * Update meta.yaml * Merge pull request #1 from bioconda/master Update fork * Create meta.yaml
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Apr 23, 2020
Merge PR bioconda#21459, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Apr 23, 2020
Merge PR bioconda#21599, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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May 29, 2020
Merge PR bioconda#22060, commits were: * negative_training_sampler v0.3.0 * negative_training_sampler v0.3.0 * bumping to v 0.2.0 * Merge pull request #1 from bioconda/master hgfhdfh * remove not necessary comments * add python version * different command? * fogott the checksum * initial commit negative_training_sampler
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Jul 16, 2021
Merge PR bioconda#29568, commits were: * Update tool version to 0.0.6 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Aug 2, 2021
Merge PR bioconda#29665, commits were: * Update version * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Aug 2, 2021
Merge PR bioconda#29575, commits were: * Update meta.yaml add the version number to each dependency * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * Merge branch 'bioconda:master' into master * Update meta.yaml * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * add pgcgap to the BtToxin_Digger repo * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build-fail-blacklist * Update BtToxin_Digger to v1.0.9 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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Sep 28, 2021
Merge PR bioconda#30247, commits were: * Fix build * Update MALT to 0.53 * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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Sep 28, 2021
Merge PR bioconda#30250, commits were: * Update version * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 28, 2021
Merge PR bioconda#30252, commits were: * Update version * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 28, 2021
Merge PR bioconda#30545, commits were: * Add summary and description * Add recipe * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 28, 2021
Merge PR bioconda#30549, commits were: * Fix typo in description * Add summary and description * Add recipe * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 28, 2021
Merge PR bioconda#30580, commits were: * Fix typo * Add recipe * Add recipe * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Oct 25, 2021
Merge PR bioconda#30952, commits were: * Fix a bug during installation of amplify v1.0.1 * Merge pull request #1 from bioconda/master update * build number to 1 * noarch to generic * update scripts for amplify v1.0.1
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Oct 25, 2021
Merge PR bioconda#30972, commits were: * change the url for source code for the path error on Mac * Merge branch 'bioconda:master' into master * Fix a bug during installation of amplify v1.0.1 * Merge pull request #1 from bioconda/master update * build number to 1 * noarch to generic * update scripts for amplify v1.0.1
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Feb 18, 2022
Merge PR bioconda#32017, commits were: * Fix jsonschema requirement * Merge branch 'bioconda:master' into master * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * See if ete3 is the issue * Update meta.yaml * Update meta.yaml * Update meta.yaml * debug * Update meta.yaml * Update meta.yaml * Update recipes/deeparg/meta.yaml * Add deepARG recipe * Merge branch 'master' of github.com:jfy133/bioconda-recipes into master * Merge branch 'bioconda:master' into master * Add deepARG recipe * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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May 27, 2022
Merge PR bioconda#33979, commits were: * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * See if ete3 is the issue * Update meta.yaml * Update meta.yaml * Update meta.yaml * debug * Update meta.yaml * Update meta.yaml * Update recipes/deeparg/meta.yaml * Add deepARG recipe * Merge branch 'master' of github.com:jfy133/bioconda-recipes into master * Merge branch 'bioconda:master' into master * Add deepARG recipe * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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May 27, 2022
Merge PR bioconda#33600, commits were: * Update meta.yaml * Merge branch 'master' into update_vsclust * Merge branch 'master' into update_vsclust * Merge branch 'master' into update_vsclust * fixed bioconductor * fixed bioconductor * Update build-fail-blacklist * Merge branch 'master' into update_vsclust * updated vsclust * update test * Merge branch 'update_vsclust' of github.com:veitveit/bioconda-recipes into update_vsclust * first test * Merge pull request #1 from veitveit/master updating * first test * Merge branch 'master' into maxquant-patch-2 * downgraded mono * changed to mono * changed to mono * changed to mono * corrected version * corrected version * Merge branch 'maxquant-patch-2' of https://github.com/veitveit/bioconda-recipes into maxquant-patch-2 * Merge branch 'bioconda:master' into maxquant-patch-2 * testing * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update maxquant dependency on dotnet MaxQuant needs a newer version of dotnet. Probably due to a versioning problem with libssl (not sure).
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May 27, 2022
Merge PR bioconda#33780, commits were: * Update pyopenms_cmakelist2.patch * Update meta.yaml * Merge pull request #1 from jpfeuffer/timosachsenberg-patch-1 add patch for hidden symbols * Update meta.yaml * add patch for hidden symbols * Update meta.yaml * Delete conda_build_config.yaml * Merge branch 'master' into pyopenms2_8_separate * Add pip..wow MacOS is really barebones * nop * Merge branch 'master' into pyopenms2_8_separate * add cmakelist patch to fix error in pyopenms 2.8 cmakelist * Merge branch 'bioconda:master' into pyopenms2_8_separate * Update meta.yaml * Add setuptools? * Prefer find python by location * Specify vindas python executable since on MacOS there is another * Xfjshajs * ... * Test cython import * Explicitly specify everything. * Add back a separate pyopenms package
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May 27, 2022
Merge PR bioconda#33790, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update PGCGAP to v1.0.34 Specified dependency version numbers to spend less memory when performing recipe testing. * update pgcgap build number specify the version of all dependences to occupy less memory * Update build number add dependencies * Merge branch 'master' into pgcgap3 * Merge branch 'bioconda:master' into master * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build-fail-blacklist remove PGCGAP * Update meta.yaml * Merge branch 'master' into pgcgap3 * Merge branch 'bioconda:master' into master * Remove some dependencies to solve error code 137 * Update PGCGAP to v1.0.33 * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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May 27, 2022
Merge PR bioconda#34268, commits were: * Update build.sh * Merge branch 'master' into btllib_recipe * path fix * version and fixes * python wrapper and fixes * python wrapper and fixes * v1.4.1 * local build fixes * lint fixes * Merge pull request #1 from vlad0x00/patch-1 Update meta.yaml * Merge branch 'btllib_recipe' into patch-1 * rm extra codes * rm extra codes * v1.4.0 * Update meta.yaml * swtich to openmp and gcc v6 * create recipes fpr btllib
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May 27, 2022
Merge PR bioconda#34517, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Add new package mgca * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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May 27, 2022
Merge PR bioconda#34556, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update dependence * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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May 27, 2022
Merge PR bioconda#34462, commits were: * Update meta.yaml * Fix build * Is this the way? * Remove version pin * Pin dotnet sdk and runtime versions to 5.0 * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34476, commits were: * Update meta.yaml * Re-add openssl pin * Add openssl req without pin * Remove openssl dependency, move back to nuget instead of github releases * Fix file name issue, add openssl runtime dep * Fix package build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34559, commits were: * Update meta.yaml * Update version to 0.0.8, fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34560, commits were: * Update version to 0.0.8, fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34527, commits were: * bumped build number bumped build number to 2 * Merge pull request #1 from USDA-ARS-GBRU/itsxpress-patch-1 Update to ITSxpress * Versioned Vsearch Versioned Vsearch to fix breaking change in API of fulllength-rerep in vsearch 2.20.
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May 27, 2022
Merge PR bioconda#34566, commits were: * Merge branch 'master' into strainscan * add strainscan recipes 5 * add strainscan recipes 4 * add strainscan recipes 3 * add strainscan recipes 2 * add strainscan recipes * Merge pull request #1 from bioconda/master add strainscan recipes * add strainscan recipes
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May 27, 2022
Merge PR bioconda#34689, commits were: * Fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34684, commits were: * Fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34685, commits were: * Fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34686, commits were: * Fix build * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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May 27, 2022
Merge PR bioconda#34699, commits were: * Update meta.yaml * adding version information * not including build or ref patch * not updating dipcall * using python build * removing ref patch * changing to AE repo * Merge pull request #1 from bioconda/master updating with bioconda * adding bedtk depdendency to dipcall
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