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Issues: dnanexus-rnd/GLnexus

pVCF representation rework
#210 opened Feb 18, 2020 by mlin
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88 Open 57 Closed
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Issues list

calling haploid chromosomes
#316 opened Nov 14, 2024 by splaisan
This image on your wiki has a transparent background and is unreadable in dark mode
#315 opened Nov 12, 2024 by dvg-p4
Allele Specific QC filtering at multi-allelic sites
#314 opened Sep 26, 2024 by jjfarrell
Inquiry Regarding IOError Encountered During Multiple Rounds of Merging gVCF Files Using GLnexus
#313 opened Jul 4, 2024 by zhanxiangzong
1
Merging vcf files error with glnexus:v1.2.7
#312 opened May 7, 2024 by poddarharsh15
RNC is ".." on site with DP=1, but it's "D." on site with DP=2
#311 opened Apr 11, 2024 by esctrionsit
bad_alloc
#309 opened Mar 7, 2024 by bbimber
6
Optimizing memory usage
#308 opened Mar 5, 2024 by georgiiprovisor
RNC field not comma-separated
#306 opened Feb 21, 2024 by holtgrewe
1
std::logic_error when running Basic Command
#305 opened Jan 30, 2024 by cantlap
1
Failed Install when using Non-Docker file Install
#304 opened Jan 30, 2024 by cantlap
IOError: RocksDB kIOError
#302 opened Dec 19, 2023 by fsw10
Genotyping specific sites from GVCF
#300 opened Nov 16, 2023 by bwubb
Invalid: allele is not a DNA sequence
#299 opened Nov 10, 2023 by bartcharbon
1
GLnexus , error while combining gvcf files
#298 opened Nov 9, 2023 by DineshRavindraRaju
3
Merging GVCF or VCF?
#296 opened Nov 1, 2023 by alanlamsiu
./runglnexus.sh: line 2: 20506 Terminated
#295 opened Oct 25, 2023 by gotouerina
deepvarinat
#293 opened Sep 15, 2023 by Tonitsk8264
Merging and variant loss
#292 opened Sep 12, 2023 by Fred-07
X and Y-chromosome calling
#291 opened Jul 5, 2023 by shaze
Is capnp-test failure a cause of worry?
#290 opened Jun 14, 2023 by ghost
The configuration presents for DeepVariant whole genome sequencing
#289 opened Jun 6, 2023 by xunzhizhang
1
Exception deserializing BCF bucket
#288 opened Apr 3, 2023 by lvclark
error
#287 opened Mar 19, 2023 by shinlin77
3
(DP) Depth value being incorrectly set to 0 for calls
#286 opened Mar 12, 2023 by carsonhh
2
ProTip! Exclude everything labeled bug with -label:bug.