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RNC field not comma-separated #306

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holtgrewe opened this issue Feb 21, 2024 · 1 comment
Open

RNC field not comma-separated #306

holtgrewe opened this issue Feb 21, 2024 · 1 comment

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@holtgrewe
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The FORMAT/RNC field is encoded as a string of length two rather than a list of two caracters.

IOW, it is:

GT:RNC      ./.:II     1/1:15:1,14:1:16,4,0:..

But (arguably?) should be:

GT:RNC      ./.:I,I     1/1:15:1,14:1:16,4,0:.,.

What are your thoughts?

Also see

@williamrowell
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Commenting on this to second it.

This field fails validation with vcf_validator:

Error: Sample #1, field RNC does not match the meta specification Number=2 (expected 2 value(s)). This occurs 4754484 time(s), first time in line 222.

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