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pango designation v1.20
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@AngieHinrichs AngieHinrichs released this 15 May 16:50
· 1826 commits to master since this release
v1.20
5c03dbe
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Release notes

fd7e152 - Cornelius Roemer, 2023-03-30 23:44:24 +0200 : Added lineage BN.1.3.10 (ORF1a:Q1918R, C13608T) with 40 designations
0574eba - InfrPopGen, 2023-03-31 15:13:51 +0100 : Added new lineage FK.1 from #1718 with 70 new sequence designations, and 89 updated from CH.1.1 and CH.1.1.17
1688362 - InfrPopGen, 2023-03-31 15:15:09 +0100 : Merge pull request #1831 from InfrPopGen/master
9415f0f - InfrPopGen, 2023-04-03 15:41:57 +0100 : Added new lineage BQ.1.1.73 from #1740 with 47 new sequence designations, and 3 updated from BQ.1.1
1d22dbd - InfrPopGen, 2023-04-03 15:43:04 +0100 : Merge pull request #1840 from InfrPopGen/master
d27266d - InfrPopGen, 2023-04-03 17:17:31 +0100 : Added new recombinant lineage XCA from #1752 with 41 new sequence designations, and 0 updated
6b58f62 - Cornelius Roemer, 2023-04-04 16:38:41 +0200 : Added lineage EG.2 (XBB.1.9.2 with S:478R) with 30 designations
9ac4960 - Cornelius Roemer, 2023-04-04 16:40:33 +0200 : Added lineage XBB.1.31 (S:453F and S:478R) with 17 designations
7f8ba07 - Cornelius Roemer, 2023-04-04 16:51:04 +0200 : Fix bug in designation_helper.py when there are no children
a69145a - Cornelius Roemer, 2023-04-04 16:53:58 +0200 : Added lineage XBB.1.32 (ORF1a:E148D) with 90 designations
21b1e91 - Cornelius Roemer, 2023-04-04 16:59:50 +0200 : Added lineage FL.1 (XBB.1.9.1 with S:701V) with 130 designations
57d6cb4 - Cornelius Roemer, 2023-04-04 17:12:31 +0200 : Added lineage XBB.2.3.3 (S:182N) with 30 designations
d68d647 - Cornelius Roemer, 2023-04-04 17:14:14 +0200 : Added lineage XBB.2.3.4 (S:478Q) with 30 designations
ebe33d3 - Cornelius Roemer, 2023-04-04 17:17:11 +0200 : Added lineage XBB.1.5.40 (S:478I) with 30 designations
b03e914 - Cornelius Roemer, 2023-04-04 17:59:13 +0200 : Added lineage FM.1 (BQ.1.1.53 with S:613H) with 150 designations
a53e555 - Cornelius Roemer, 2023-04-04 18:00:14 +0200 : Added lineage FM.2 (BQ.1.1.53 with S:946R) with 180 designations
55d4ad1 - Cornelius Roemer, 2023-04-04 18:25:22 +0200 : Added lineage FL.2 (XBB.1.9.1 with T4579A) with 600 designations
1270406 - InfrPopGen, 2023-04-05 19:13:56 +0100 : Added new lineage BQ.1.1.74 from #1817 with 70 new sequence designations, and 6 updated from BQ.1.1
adfca1a - InfrPopGen, 2023-04-05 19:15:50 +0100 : Merge pull request #1848 from InfrPopGen/master
c29cc87 - Cornelius Roemer, 2023-04-05 21:32:32 +0200 : Sort lineage_notes.txt correctly
b211300 - Cornelius Roemer, 2023-04-05 21:37:02 +0200 : Added lineage FN.1 (BQ.1.1.74 with S:478R) from #1817 with 70 designations
9d23043 - Cornelius Roemer, 2023-04-07 22:07:36 +0200 : Added lineage EG.1.1 (S:V70F) with 50 designations
280fd9a - Cornelius Roemer, 2023-04-07 22:18:06 +0200 : Added lineage XBB.1.28.1 (S:356T) with 50 designations
71514b7 - Cornelius Roemer, 2023-04-07 22:33:57 +0200 : Added lineage CJ.1.2 (ORF1a:L2609F) with 300 designations
c3a167d - Cornelius Roemer, 2023-04-07 22:36:21 +0200 : Added lineage CJ.1.3 (A261G reversion, G4960A, C14790T) with 300 designations
d42820b - Cornelius Roemer, 2023-04-08 15:13:24 +0200 : Added lineage XBF.1.1 (S:P621S) with 60 designations
85d749a - Cornelius Roemer, 2023-04-08 15:16:08 +0200 : Add lineage XBF.10 (S:M153I) with 16 designations
5e62d57 - InfrPopGen, 2023-04-11 11:45:14 +0100 : Added new lineage FP.1 from #1847 with 29 new sequence designations, and 0 updated
6177686 - InfrPopGen, 2023-04-11 11:46:59 +0100 : Merge pull request #1873 from InfrPopGen/master
7921837 - InfrPopGen, 2023-04-11 13:53:41 +0100 : Added new lineage BF.42 from #1855 with 30 new sequence designations, and 0 updated
7b1f1a3 - InfrPopGen, 2023-04-11 13:55:11 +0100 : Merge pull request #1874 from InfrPopGen/master
af07cc3 - InfrPopGen, 2023-04-11 16:08:46 +0100 : Added new lineage CH.1.1.23 from #1862 with 21 new sequence designations, and 3 updated from CH.1.1
8b1904d - InfrPopGen, 2023-04-11 16:09:52 +0100 : Merge pull request #1875 from InfrPopGen/master
e236502 - InfrPopGen, 2023-04-12 11:34:16 +0100 : Added new lineage XBB.2.3.5 from #1846 with 5 new sequence designations, and 0 updated
67245eb - InfrPopGen, 2023-04-12 11:35:15 +0100 : Merge pull request #1880 from InfrPopGen/master
95a25bd - InfrPopGen, 2023-04-13 16:00:49 +0100 : Added new lineage FK.1.1 from #1881 with 0 new sequence designations, and 18 updated from FK.1
52e606d - InfrPopGen, 2023-04-13 16:01:52 +0100 : Merge pull request #1883 from InfrPopGen/master
2797d5f - InfrPopGen, 2023-04-14 14:24:28 +0100 : Added new recombinant lineage XCB from #1668 with 46 new sequence designations, and 0 updated
64db020 - InfrPopGen, 2023-04-14 14:26:07 +0100 : Merge pull request #1887 from InfrPopGen/master
4e851b1 - Cornelius Roemer, 2023-04-17 18:51:31 +0200 : Minor lineage notes improvements
342920d - InfrPopGen, 2023-04-17 19:33:11 +0100 : Added new lineage FQ.1 from #1797 with 40 new sequence designations, and 0 updated
a90bc6b - InfrPopGen, 2023-04-17 19:34:38 +0100 : Merge pull request #1905 from InfrPopGen/master
223d79a - InfrPopGen, 2023-04-18 14:39:54 +0100 : Added new lineage XBB.1.33 from #1879 with 18 new sequence designations, and 0 updated
7066483 - InfrPopGen, 2023-04-18 14:41:15 +0100 : Merge pull request #1912 from InfrPopGen/master
45c0707 - Cornelius Roemer, 2023-04-19 16:24:19 +0200 : Designate lineage XBL.1 (S:V635I) with 50 designations
09f25aa - Cornelius Roemer, 2023-04-19 16:31:16 +0200 : Designate lineages XBL.2 and XBL.3, add extra strains for XBL
b0f4701 - Cornelius Roemer, 2023-04-19 16:52:03 +0200 : Designate lineage XBB.2.3.6 (N:T166I) with 158 sequences
c6afc3c - Cornelius Roemer, 2023-04-19 16:59:23 +0200 : Designate lineage XBB.2.3.7 (ORF1a:T4087I) with 60 designations
7ff92cc - Cornelius Roemer, 2023-04-19 17:02:20 +0200 : Add extra XBB.2.3 to lineages.csv
99ba344 - InfrPopGen, 2023-04-20 19:46:25 +0100 : Added new lineage XBB.1.34 from #1621 with 33 new sequence designations, and 0 updated
ba825c7 - InfrPopGen, 2023-04-20 19:47:30 +0100 : Merge pull request #1926 from InfrPopGen/master
8e6f6dd - InfrPopGen, 2023-04-21 14:12:44 +0100 : Added new lineage FR.1 from #1814 with 244 new sequence designations, and 4 updated from BN.1.2.3
b5780a3 - InfrPopGen, 2023-04-21 14:14:02 +0100 : Merge pull request #1934 from InfrPopGen/master
0ab8a0b - InfrPopGen, 2023-04-21 16:08:47 +0100 : Added new lineage FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
a2da67c - InfrPopGen, 2023-04-21 16:10:14 +0100 : Merge pull request #1935 from InfrPopGen/master
d6f82ca - InfrPopGen, 2023-04-21 16:12:17 +0100 : Added missing lineages.csv updates for FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
441061d - InfrPopGen, 2023-04-21 16:14:18 +0100 : Merge pull request #1936 from InfrPopGen/master
f2fa07d - Cornelius Roemer, 2023-04-22 17:42:56 +0200 : Add recombinant XCC (CH.1.1.1/XBB.1.9.1) with 30 designations
c3a7f99 - Cornelius Roemer, 2023-04-22 18:17:57 +0200 : Designate EG.3 (XBB.1.9.2 with ORF1a:L2278F on N:L219F)
8289cb0 - Cornelius Roemer, 2023-04-22 18:20:35 +0200 : Added lineage EG.1.2 (ORF7b:H42Y) with 600 designations
0431660 - Cornelius Roemer, 2023-04-22 18:22:06 +0200 : Added lineage EG.1.3 (C3784T, A6613G) with 500 designations
a03b0dc - Cornelius Roemer, 2023-04-22 18:24:23 +0200 : Added lineage EG.1.4 (ORF1a:S2500F) with 400 designations
242699e - Cornelius Roemer, 2023-04-22 18:32:31 +0200 : Added lineage EG.4 (XBB.1.9.2 with C28651T) with 400 designations
cd5580d - Cornelius Roemer, 2023-04-22 18:37:06 +0200 : Added lineage EG.5 (S:F456L) with 12 designations
2d736bc - Cornelius Roemer, 2023-04-22 18:46:19 +0200 : Added lineage FL.3 (XBB.1.9.1 with T1753C) with 900 designations
90a2ec2 - Cornelius Roemer, 2023-04-22 18:48:48 +0200 : Added lineage FL.4 (XBB.1.9.1 with ORF1b:V1092F) with 400 designations
721729e - Cornelius Roemer, 2023-04-22 18:53:04 +0200 : Added lineage FL.5 (XBB.1.9.1 with N:T362I) with 200 designations
416a59a - Cornelius Roemer, 2023-04-22 19:48:43 +0200 : Added lineage FK.1.2 (ORF1a:L384F, ORF1a:R550H) with 300 designations
85e7c0b - Cornelius Roemer, 2023-04-22 21:00:18 +0200 : Added lineage FT.1 (XBB.1.5.39 with S:I197V) with 300 designations
7820a81 - Cornelius Roemer, 2023-04-22 21:45:29 +0200 : Added lineage XAY.2.3 (ORF1a:A131V) with 150 designations
62fec83 - Cornelius Roemer, 2023-04-22 21:50:59 +0200 : Added lineage XAY.1.1.2 (C14838T) with 35 designations
b119264 - Cornelius Roemer, 2023-04-22 21:55:06 +0200 : Added lineage XAY.1.1.3 (C6040T, C8290T, T15153C) with 50 designations
c93a471 - Cornelius Roemer, 2023-04-22 22:39:41 +0200 : Added lineage XBB.1.16.2 (ORF3a:V13L, ORF1a:P926H) with 200 designations
b75a5d4 - Cornelius Roemer, 2023-04-22 22:42:38 +0200 : Added lineage XBB.1.16.3 (A2893C) with 60 designations
4d852e2 - Cornelius Roemer, 2023-04-22 22:47:06 +0200 : Added lineage FU.1 (XBB.1.16.1 with T3802C) with 150 designations
d0f51a1 - Cornelius Roemer, 2023-04-22 22:49:39 +0200 : Added lineage FU.2 (XBB.1.16.1 with C8692T) with 100 designations
ee79541 - Cornelius Roemer, 2023-04-22 23:09:51 +0200 : Added lineage XBB.1.5.41 (S:V772I, S:P521T) from #1941
81bb097 - Cornelius Roemer, 2023-04-22 23:31:31 +0200 : Added lineage XBB.1.5.42 (S:E281D) with 100 designations from #1933
befe4e2 - Cornelius Roemer, 2023-04-22 23:53:13 +0200 : Added lineage FL.2.1 (C10228T) with 200 designations
68615bb - Cornelius Roemer, 2023-04-22 23:56:39 +0200 : Added lineage FL.2.2 (S:478R) with 15 designations from #1927
b622915 - Cornelius Roemer, 2023-04-23 18:09:33 +0200 : tooling: add --keep-first option to add_to_lineages.sh
052d3f4 - Cornelius Roemer, 2023-04-23 18:10:15 +0200 : Add extra XBC.1.6 designations
6501158 - Cornelius Roemer, 2023-04-23 18:13:07 +0200 : Added lineage XBC.1.6.1 (ORF1b:N498I) with 80 designations
6b0d4fd - Cornelius Roemer, 2023-04-23 18:14:28 +0200 : Added lineage XBC.1.6.2 (ORF1a:D827N) with 35 designations
0cb2b59 - Cornelius Roemer, 2023-04-23 18:16:42 +0200 : Added lineage XBC.1.6.3 (N:A173V) with 20 designations
d59c7ed - Cornelius Roemer, 2023-04-23 19:04:21 +0200 : Added lineage XBB.1.5.43 (C18501T) with 200 designations
5863f22 - Cornelius Roemer, 2023-04-23 19:19:00 +0200 : Added lineage XBB.1.35 (ORF1a:V89A) with 100 designations
a32c539 - Cornelius Roemer, 2023-04-23 19:31:41 +0200 : Added lineage XBB.1.5.44 (S:K356T, S:T572I) from #1907
aeefa45 - Cornelius Roemer, 2023-04-23 21:48:20 +0200 : Added lineage XBB.1.5.45 (S:478R, C27425T, G28079T) with 60 designations
9c277b9 - Cornelius Roemer, 2023-04-23 22:01:11 +0200 : Added lineage XBB.1.5.46 (C5770T, C15279T) with 1.5k designatons
5fee394 - Cornelius Roemer, 2023-04-23 22:40:14 +0200 : Fix typos in lineage_notes.txt, resolves #1943
b33756e - Cornelius Roemer, 2023-04-23 22:50:35 +0200 : Change defining mutation for XBC.1.6.1 from ORF1b:N498I to ORF8:P36L
c0d5476 - Cornelius Roemer, 2023-04-24 11:30:41 +0200 : Fix typo in lineages.csv XBC.1.5.43 -> XBB.1.5.43
42db49d - Cornelius Roemer, 2023-04-24 11:32:02 +0200 : Fix typo in lineages.csv XBB.1.6.1 -> XBC.1.6.1
6df45ef - InfrPopGen, 2023-04-24 16:10:29 +0100 : Added new lineage XBB.1.36 from #1781 with 26 new sequence designations, and 18 updated from XBB.1
9da8681 - InfrPopGen, 2023-04-24 16:11:56 +0100 : Merge pull request #1952 from InfrPopGen/master
e37c661 - Cornelius Roemer, 2023-04-24 22:46:56 +0200 : Add lineage XBB.8.1 (S:486P) with 20 designations
d782a1b - Cornelius Roemer, 2023-04-24 23:03:59 +0200 : Add lineage XBB.9 (N:T49I) with 600 designations
a1a5f9f - Cornelius Roemer, 2023-04-24 23:42:50 +0200 : Add lineage XBB.3.4 (S:E990D) with 50 designations
a3138ef - Cornelius Roemer, 2023-04-25 17:10:35 +0200 : Add lineage XBB.1.5.47 (C1912T) with 800 designations
98cc855 - Cornelius Roemer, 2023-04-25 17:14:56 +0200 : Add lineage XBB.1.5.48 (A24730T) with 1800 designations
4d10905 - Cornelius Roemer, 2023-04-25 17:17:29 +0200 : Add lineage XBB.1.5.49 (T6886C) with 1400 designations
0cdd298 - Cornelius Roemer, 2023-04-26 02:22:29 +0200 : Add lineage EU.1.1.1 (C21646T) with 200 designations
ae0c152 - Cornelius Roemer, 2023-04-26 02:27:37 +0200 : Add lineage XBB.1.5.50 (S:621S, N:T49I) with 200 designations
098a089 - Cornelius Roemer, 2023-04-26 02:29:15 +0200 : Add lineage XBB.1.5.51 (ORF1a:D3009A) with 1000 designations
c2b6da2 - Cornelius Roemer, 2023-04-26 02:33:25 +0200 : Add lineage XBB.1.5.52 (C3589T) with 1000 designations
8687b59 - Cornelius Roemer, 2023-04-26 02:56:01 +0200 : Add lineage FV.1 (CM.8.1.1 with S:346T) with 11 designations
c5a06b0 - Cornelius Roemer, 2023-04-26 03:02:04 +0200 : Add lineage XBB.1.5.53 (S:150I,582F,403K) with 7 designations
33cf553 - Cornelius Roemer, 2023-04-26 03:05:10 +0200 : Add extra CH.1.1.20 designations
d0be24c - Cornelius Roemer, 2023-04-26 03:08:55 +0200 : Add lineage XBB.1.9.6 (S:403K,S:570T) with 10 designations
e97f9fb - InfrPopGen, 2023-04-28 16:24:50 +0100 : Added new lineage BQ.1.2.2 from #1861 with 7 new sequence designations, and 0 updated
7174502 - InfrPopGen, 2023-04-28 16:26:23 +0100 : Merge pull request #1971 from InfrPopGen/master
ff3cd79 - Cornelius Roemer, 2023-05-01 16:57:20 +0200 : Added lineage FW.1 (XBB.1.28.1 with S:A701V) with 20 designations
d7bfc16 - Cornelius Roemer, 2023-05-01 17:00:28 +0200 : Added lineage FW.2 (XBB.1.28.1 with ORF1a:G2258C) with 19 designations
da6e07f - Cornelius Roemer, 2023-05-01 17:58:13 +0200 : Added lineage XBB.1.5.54 (C14358T,C20016T,C29311T) with 70 designations
96aeb01 - Cornelius Roemer, 2023-05-01 19:04:00 +0200 : Added lineage EK.4 (S:Q675K) with 70 designations
5d8ba95 - Cornelius Roemer, 2023-05-01 22:36:27 +0200 : Added lineage XBB.2.3.8 (C2013T, T16389C, S:478R) with 45 designations from #1866
a6a6de0 - Cornelius Roemer, 2023-05-03 10:20:09 +0200 : Add extra CH.1.1.20 designations
8561bd4 - Cornelius Roemer, 2023-05-03 10:40:32 +0200 : Add lineage FD.3 (XBB.1.5.15 with S:A348S) with 80 designations
3064fad - Cornelius Roemer, 2023-05-03 10:47:46 +0200 : Add lineage XBB.1.5.55 (ORF1a:T3356I) with 400 designations
2d38716 - Cornelius Roemer, 2023-05-03 11:08:56 +0200 : Add lineage FL.6 (XBB.1.9.1 with ORF1a:I849V) with 20 designations
e97a0a0 - rquiroga7, 2023-05-04 12:30:24 -0300 : Update lineage_notes.txt (#1964)
009c571 - Cornelius Roemer, 2023-05-04 17:39:36 +0200 : Add lineage XBB.2.3.9 (S:S98F) with 50 designations
626adfa - Cornelius Roemer, 2023-05-04 17:41:51 +0200 : Add lineage XBB.2.3.10 (T5947C) with 60 designations
85d372d - Cornelius Roemer, 2023-05-04 19:00:41 +0200 : Add lineage FY.1 (XBB.1.22.1 with ORF1b:D1782N) with 250 designations
e6c4116 - Cornelius Roemer, 2023-05-04 19:03:08 +0200 : Add lineage FY.2 (XBB.1.22.1 with S:I197T) with 50 designations
0e64782 - Cornelius Roemer, 2023-05-04 19:09:38 +0200 : Add lineage FY.3 (XBB.1.22.1 with ORF1a:E750K) with 25 designations
64bd958 - Cornelius Roemer, 2023-05-04 19:15:11 +0200 : Add lineage FY.4 (XBB.1.22.1 with S:Y451H) with 20 designations
b3bc595 - Cornelius Roemer, 2023-05-05 09:25:15 +0200 : Add lineage FZ.1 (XBB.1.5.47 with S:E583D) with 250 designations
37ce928 - Cornelius Roemer, 2023-05-05 09:26:43 +0200 : Add lineage FZ.1.1 (S:L858I) with 150 designations
184cb5a - Cornelius Roemer, 2023-05-05 09:29:10 +0200 : Add lineage FZ.2 (XBB.1.5.47 with S:836R) with 90 designations
e08093d - Cornelius Roemer, 2023-05-05 09:31:50 +0200 : Add lineage XBB.1.5.56 (S:A852S) with 300 designations
8176b5d - Cornelius Roemer, 2023-05-05 09:38:08 +0200 : Add lineage XBB.1.16.4 (S:T678I) with 80 designations
1d296dd - Cornelius Roemer, 2023-05-05 10:33:30 +0200 : Add extra XBL(.1/.2/.3) designations
c98c201 - Cornelius Roemer, 2023-05-05 10:52:45 +0200 : Designate XBB.1.5.47 (A20379G,C28312T, pre-T17124C) with 400 designations
294eb72 - Cornelius Roemer, 2023-05-05 11:01:17 +0200 : Update XBL info after XBB.1.5.57 designation
2259217 - Cornelius Roemer, 2023-05-05 15:27:47 +0200 : Fix lineages.csv: XBB.1.5.47 -> XBB.1.5.57
e56d05f - Cornelius Roemer, 2023-05-05 22:25:15 +0200 : Designated lineage FE.1.1 (ORF8:S67F) with 100 designations
1c368f3 - Cornelius Roemer, 2023-05-05 22:38:10 +0200 : Designate FE.1.2 (A5488G) with 180 sequences, add extra FE.1
6ef4894 - Cornelius Roemer, 2023-05-06 11:55:57 +0200 : Designate GA.1 (XBB.1.17.1 with ORF1a:G728C) with 80 seqs
f97dd6d - Cornelius Roemer, 2023-05-06 11:58:49 +0200 : Designate GA.2 (XBB.1.17.1 with ORF3a:I179F) with 175 seqs
8df423b - Cornelius Roemer, 2023-05-06 12:02:02 +0200 : Designate GA.3 (XBB.1.17.1 with ORF1b:A186V) with 80 seqs
4297919 - Cornelius Roemer, 2023-05-06 12:12:20 +0200 : Designate CH.1.1.24 (T931C,T6676C) with 1100 seqs
299e4f3 - Cornelius Roemer, 2023-05-06 12:14:52 +0200 : Designate CH.1.1.25 (ORF1a:S330L,ORF1a:P4197S) with 600 seqs
4348025 - Cornelius Roemer, 2023-05-06 12:16:26 +0200 : Designate CH.1.1.26 (C29296T) with 500 seqs
1eab77f - Cornelius Roemer, 2023-05-06 12:24:57 +0200 : Designate DV.6 (CH.1.1.1 with T15591C) with 1400 seqs
b4eee09 - Cornelius Roemer, 2023-05-06 12:30:22 +0200 : Designate CH.1.1.27 (ORF1a:S538L) with 400 seqs
03d80ac - Cornelius Roemer, 2023-05-06 12:59:17 +0200 : Designate XBB.1.5.58 (S:S704L, Guinea) with 30 seqs from #1860
d250f1c - Cornelius Roemer, 2023-05-06 13:03:11 +0200 : Designate XBB.1.5.59 (S:F456L, ORF1a:S2822P) from #1949 with 100 seqs
ec25a3c - Cornelius Roemer, 2023-05-06 13:16:00 +0200 : Add XBB.1.5.60 (S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany) with 300 seqs
37e06ca - Cornelius Roemer, 2023-05-06 13:31:24 +0200 : Add XBB.1.5.61 (T11536C, USA) with 500 seqs
817bf51 - Cornelius Roemer, 2023-05-06 13:32:44 +0200 : Add XBB.1.5.62 (C29095T) with 600 seqs
459eb3a - Cornelius Roemer, 2023-05-06 13:35:13 +0200 : Add XBB.1.5.63 (C346T, Germany/Mauritius) with 900 seqs
d558bca - Cornelius Roemer, 2023-05-06 13:36:52 +0200 : Add XBB.1.5.64 (C29708T) with 1300 designations
723e02a - Cornelius Roemer, 2023-05-06 13:40:25 +0200 : Designate XBB.1.5.65 (C583T, Germany) with 750 seqs
1d49a86 - Cornelius Roemer, 2023-05-06 13:42:12 +0200 : Designate XBB.1.5.66 (ORF1a:G519S, US) with 600 seqs
4393d6f - Cornelius Roemer, 2023-05-06 13:44:16 +0200 : Designate XBB.1.5.67 (C21691T, USA) with 1300 seqs
7eb4196 - Cornelius Roemer, 2023-05-06 13:52:44 +0200 : Designate GB.1 (XBB.1.5.46. with S:L518V, France) from #1969 with 200 seqs
b810a1c - Cornelius Roemer, 2023-05-06 15:53:41 +0200 : Designate XBB.1.16.5 (T9991C,C16332T) from #1983 with 70 seqs
12ce0af - Cornelius Roemer, 2023-05-06 18:53:16 +0200 : Designate FD.4 (XBB.1.5.15 with ORF1a:L4191F) with 1000 seqs
a127e3b - Cornelius Roemer, 2023-05-06 20:03:13 +0200 : Designate FL.7 (XBB.1.9.1 with S:T51I) with 100 seqs
90ada11 - Cornelius Roemer, 2023-05-06 20:10:41 +0200 : Designate XBB.1.5.68 (S:P521T) with 180 seqs
c2a6a7e - Cornelius Roemer, 2023-05-06 20:24:17 +0200 : Designate XBB.1.37 (A5371G) with 300 seqs
88eccd0 - Cornelius Roemer, 2023-05-06 20:26:20 +0200 : Designate XBB.1.37.1 (S:486P) with 140 seqs, from #1929
30abaef - Cornelius Roemer, 2023-05-07 09:18:52 +0200 : Designate XBB.1.5.69 (ORF1a:V2943I,C22513T, USA) with 400 seqs
511cf79 - Cornelius Roemer, 2023-05-07 09:25:57 +0200 : Designate XBB.1.16.6 (S:F456L, A12397G, USA/Canada/China) with 7 seqs
15e2b10 - Cornelius Roemer, 2023-05-07 09:30:06 +0200 : Designate EG.5.1 (S:Q52H) with 25 seqs
23a9f30 - Cornelius Roemer, 2023-05-07 09:37:38 +0200 : Desginate GC.1 (XBB.1.5.21 with S:T323I) with 70 seqs
96cc31b - Cornelius Roemer, 2023-05-07 09:39:15 +0200 : Designate GC.2 (XBB.1.5.21 with S:A352S) with 60 seqs
a34b4ce - Cornelius Roemer, 2023-05-07 09:51:06 +0200 : Designate FL.8 (XBB.1.9.1.8, ORF3a:I62F) with 250 seqs
5ff879e - Cornelius Roemer, 2023-05-07 09:53:01 +0200 : Designate FL.9 (XBB.1.9.1.9, T29691C, England) with 250 seqs
27ae403 - Cornelius Roemer, 2023-05-07 09:55:16 +0200 : Designate FL.10 (XBB.1.9.1.10, ORf1a:C657Y) with 200 seqs
bc4162b - Cornelius Roemer, 2023-05-07 09:57:41 +0200 : Designate FL.11 (XBB.1.9.1.11, ORF1a:L394F, France/French Guiana), from #1947, 150 seqs
762113d - Cornelius Roemer, 2023-05-07 10:55:45 +0200 : Designated CH.1.1.28 (ORF1b:V1092F, Europe) with 450 seqs
b094ce2 - Cornelius Roemer, 2023-05-07 11:04:22 +0200 : Designate FL.3.1 (ORF1a:T2264I, England) with 800 seqs
87c1375 - Cornelius Roemer, 2023-05-07 11:06:41 +0200 : Designate FL.3.2 (T8830C, England/Spain) with 480 seqs
bee75ad - Cornelius Roemer, 2023-05-07 11:08:59 +0200 : Designate FL.3.3 (ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England) with 300 seqs
5e164a4 - Cornelius Roemer, 2023-05-07 11:10:50 +0200 : Designate FL.3.4 (G10642C, T26232C, England) with 150 seqs
4f1b8ac - Cornelius Roemer, 2023-05-07 11:15:22 +0200 : Designate XBB.1.24.1 (S:L518Q, Singapore) with 60 seqs
9b5d6e3 - Cornelius Roemer, 2023-05-07 11:17:40 +0200 : Designate XBB.1.24.2 (S:R158S, after ORF1a:K261N, N:A35T, Singapore/Malaysia) with 20 seqs
e95e41f - Cornelius Roemer, 2023-05-07 11:19:17 +0200 : Designate XBB.1.24.3 (S:S256L, after ORF1a:K261N, N:A35T, Malaysia/Japan) with 15 seqs
715eb73 - Cornelius Roemer, 2023-05-07 11:59:54 +0200 : Designate XBB.1.38 (S:T732I, Russia) with 170 seqs
20773b6 - Cornelius Roemer, 2023-05-07 12:05:13 +0200 : Designate GD.1 (=XBB.1.9.3.1, S:Y453F, Mexico/USA), from #1897, 20 seqs
d4b3c18 - Cornelius Roemer, 2023-05-07 12:07:30 +0200 : Designate XBB.1.39 (ORF1a:V2866M, Singapore/Malaysia) with 80 seqs
23aa9e6 - Cornelius Roemer, 2023-05-07 12:14:37 +0200 : Designate XBB.1.40 (S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia) with 9 seqs
cfd0a4e - Cornelius Roemer, 2023-05-07 12:20:38 +0200 : Designate GE.1 (Alias of XBB.2.3.10.1, S:K478R), from #1866, 25 seqs
687d94c - Cornelius Roemer, 2023-05-07 12:26:03 +0200 : Designate XBB.2.3.11 (S:K478R, India), from #1866, 75 seqs
be12729 - Cornelius Roemer, 2023-05-07 12:29:28 +0200 : Designate FL.1.1 (ORF1b:Q2635P, USA/Australia) with 60 seqs
7400c8b - Cornelius Roemer, 2023-05-07 12:31:29 +0200 : Designate FL.1.2 (ORF1a:T4311I, South Korea/Italy/Spain) with 60 seqs
7c4ea68 - Cornelius Roemer, 2023-05-07 12:33:49 +0200 : Designate FL.1.3 (ORF1a:T1881I, ORF1b:M606I, South Korea) with 70 seqs
0ce0196 - Cornelius Roemer, 2023-05-07 17:14:35 +0200 : Designate XBB.3.5 (ORF1a:T4083M, Mozambique) with 100 seqs
f05aef5 - Cornelius Roemer, 2023-05-07 17:19:04 +0200 : Designate BN.1.2.5 (C3241T, C16833T, G22225A, South Korea) with 1000 seqs
8f32d19 - Cornelius Roemer, 2023-05-07 17:22:50 +0200 : Designate FR.2 (BN.1.2.3 with ORF1a:Y1920H, ORF1b:I1799S, South Korea) with 600 seqs
197228d - Cornelius Roemer, 2023-05-07 17:25:36 +0200 : Designate BN.1.2.6 (ORF1b:A1326S, South Korea) with 400 seqs
51183ea - Cornelius Roemer, 2023-05-07 17:29:20 +0200 : Designate EJ.3 (BN.1.3.8 with C2509T, C3241T, C17004T, South Korea) with 250 seqs
9bf47a8 - Cornelius Roemer, 2023-05-07 17:35:01 +0200 : Designate BN.1.3.11 (ORF1a:T568I, ORF1a:V1211F, South Korea) with 100 seqs
531f5d0 - Cornelius Roemer, 2023-05-07 18:27:31 +0200 : Designate BQ.1.2.3 (E:V24L, Canada) with 2k seqs
d717307 - Cornelius Roemer, 2023-05-07 18:31:13 +0200 : Designate BQ.1.3.1 (C2509T, Spain) with 2k seqs
7528bf2 - Cornelius Roemer, 2023-05-07 18:32:22 +0200 : Designate BQ.1.3.2 (ORF1a:L1853F, USA) with 2k seqs
ff1db70 - Cornelius Roemer, 2023-05-07 18:36:39 +0200 : Designate BQ.1.33 (S:F157L, S:K147I) with 150 seqs
d7197f6 - Cornelius Roemer, 2023-05-07 18:39:40 +0200 : Designate DN.2 (BQ.1.1.5 with ORF1b:D2351N, USA) with 1200 seqs
27102c8 - Cornelius Roemer, 2023-05-07 18:42:35 +0200 : Designate DN.3 (ORF1a:V1025L) and DN.3.1 (S:K182E) with 200/60 seqs
189d402 - Cornelius Roemer, 2023-05-07 21:49:29 +0200 : Fix lineage notes for XBB.1.24.3
cb64a77 - Cornelius Roemer, 2023-05-08 11:17:40 +0200 : Designate XBB.1.32.1 (S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand) with 10 seqs
876aa63 - Cornelius Roemer, 2023-05-08 11:32:28 +0200 : Designate FL.12 (ORF1a:C2210F) with 400 seqs
b934e8b - Cornelius Roemer, 2023-05-09 10:49:07 +0200 : Add C23707T as lineage defining mutation to FL.9
0bb00e9 - Cornelius Roemer, 2023-05-09 15:08:18 +0200 : Narrow XBB.1.5.64 adding G8137A as defining, 200 seqs
82f7c20 - Cornelius Roemer, 2023-05-09 15:14:41 +0200 : Fix typo in lineage notes: ORF1a:L349F defines FL.11
22b4222 - InfrPopGen, 2023-05-11 11:21:25 +0100 : Added new lineage XBB.2.9 from #1877 with 40 new sequence designations, and 6 updated from XBB.2
5c03dbe - InfrPopGen, 2023-05-11 11:23:09 +0100 : Merge pull request #1992 from InfrPopGen/master

Assets 2
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