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45 Open 145 Closed
45 Open 145 Closed
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Issues list

Missing SBO Terms in XML Output with CarveMe
#212 opened Oct 18, 2024 by xuetingyue
Multi-process processing error
#211 opened Oct 12, 2024 by green34567
1
Too many charge unbalaced reactions
#210 opened Sep 30, 2024 by AnnyMais03
installation issue
#209 opened Sep 21, 2024 by ChenCongZ
Inconsistencies between reactions in universe file and in model generated from it
#208 opened Sep 13, 2024 by Brunokemon
2
Carveme not finishing with SCIP solver
#205 opened Jun 21, 2024 by ryan-boobybiome
Carveme 2.0
#204 opened Jun 19, 2024 by rhernandvel
Incomplete cyanobacteria universe - lacks photosynthesis related reactions
#203 opened Jun 14, 2024 by GediminasA
1
Location of gapfill outputs
#201 opened May 21, 2024 by AzizBenA
Hidden universe?
#197 opened Mar 15, 2024 by NatashaJorge
Having issues with cyanobacteria universe in latest version, and cplex installation for carveme version 1.4
#195 opened Jan 17, 2024 by marlaux
Is it necessary to use a VNC server for the modeling process using CarveMe?
#194 opened Jan 6, 2024 by Thomas-tang880
I meet some errors when I use CarveMe for gap-filling
#193 opened Dec 30, 2023 by microbial-cookie
4
How to create a universe?
#192 opened Dec 30, 2023 by kako-f
Error when giving user universe
#190 opened Nov 27, 2023 by NatashaJorge
Biomass reaction in bacteria_universe sums to 1.03
#189 opened Oct 26, 2023 by sulheim
1
incompatibility with BIGG formula
#188 opened Aug 21, 2023 by Shlomit840
'BiGG_gene' is both an index level and a column label, which is ambiguous.
#187 opened Aug 11, 2023 by Baizhou12138
1
Diamond version incompatible / TypeError: sequence item 0
#186 opened Jul 25, 2023 by chumphati
CarveMe doesn’t satisfy the original protein complex definitions during the building of GPRs
#182 opened Jun 15, 2023 by lazzarigioele
Solver error: pip release not corresponding to latest release
#181 opened Jun 12, 2023 by Robaina
CarveMe ignores highly similar genes during the building of GPRs
#180 opened Jun 7, 2023 by lazzarigioele
Error encountered reading the model file
#179 opened May 17, 2023 by jiuchuyuan
2
The interested compound without BIGG id, could you help me add to the media components that Carveme can identify?
#178 opened May 11, 2023 by microbial-cookie
example codes
#177 opened May 5, 2023 by parsanayyara
ProTip! no:milestone will show everything without a milestone.