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How to create a universe? #192

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kako-f opened this issue Dec 30, 2023 · 0 comments
Open

How to create a universe? #192

kako-f opened this issue Dec 30, 2023 · 0 comments

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@kako-f
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kako-f commented Dec 30, 2023

Hi!, sorry if this is kind obvious but I'm having a hard time understanding how to create a customized universe model.

According to the readme.

A script with some utility functions is available to help you build your own templates. For instructions please check:
build_universe -h

But it's kind lacking on the help.

I understand that it's necessary to provide a reaction database, do i need to manually create one? in sbml format?

the curate_universe script accepts a SBML formatted file, but it fails because of size limits

cplex.exceptions.errors.CplexSolverError: CPLEX Error 1016: Community Edition. Problem size limits exceeded. Purchase at https://ibm.co/2s0wqSa.

and I'm not seeing a "--solver" option available.

I'm kind lost, any help would be appreciated.

Thanks!

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