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Allow input arguments and data source initialization code to be shared across traversal types #299

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droazen opened this issue Mar 12, 2015 · 1 comment
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Allow input arguments and data source initialization code to be shared across traversal types #299

droazen opened this issue Mar 12, 2015 · 1 comment
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droazen commented Mar 12, 2015

Currently, each Walker class defines its own input arguments, and contains its own code to initialize the appropriate data sources for the inputs present. This code should ideally be shared across traversal types (eg., in GATKTool), with the ability to override attributes such as required and optional on a per-traversal and/or per-tool basis.

Potentially requires #149

Related to: #120, #133, #141
@droazen droazen added this to the Coelacanth milestone Mar 12, 2015
@droazen droazen self-assigned this Mar 12, 2015
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droazen commented Mar 16, 2015

This was done as part of #297 -- closing. (#149 is still an open TODO, however)

@droazen droazen closed this as completed Mar 16, 2015
@akiezun akiezun modified the milestone: Coelacanth Apr 20, 2015
kcibul added a commit that referenced this issue May 26, 2021
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#299 - Sample list ease of use for cohort extracts (#7272)
f09214c 
* work on issue 299
* PR comments
* update dockstore/image
This was referenced Mar 17, 2023
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