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palagdan wants to merge 201 commits intoblcham:mainblcham/record-manager:mainfrom kbss-cvut:202-fine-grainedkbss-cvut/record-manager:202-fine-grainedCopy head branch name to clipboard

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Commits on Oct 12, 2023

• [Upd] Migrate to Spring Boot 3.

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• [Upd] Migrate tests to JUnit 5, fix test issues.

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• [Ref] Modify login processing URL to match the old configuration.

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• [Upd] Update Dockerfile to work with the new application.

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• [Upd] Update GitHub actions, make them specific for this repository.

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• [Doc] Update documentation and readme.

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• [Doc] Remove Apache Tomcat from requirements.

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• [Ref] Introduce annotation-based transactional processing.

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Commits on Oct 13, 2023

• [Ref] Refactor tests to use the declarative transactions.

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• [Fix] Fix OFN link in readme.

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• [Ref] Code cleanup, add some explanatory comments.

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• [Fix] Fix issues discovered by testing against frontend.

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Commits on Oct 18, 2023

• [Fix] Implement change requested in PR review.

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• Merge pull request #2 from akaene/main

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Commits on Oct 19, 2023

• [Ref] Simplify security code, remove custom AuthenticationToken class in favor of reusing Spring types.

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• Add support for OIDC authentication.

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• Improve roles extraction from OIDC access token.

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Commits on Oct 20, 2023

• [Ref] Refactor SecurityUtilsTest.

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• Implement retrieval of current user from OAuth access token.

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• Disable user management API when OIDC security is used.

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Commits on Oct 26, 2023

• Ensure config.properties are loaded in time for configured correct security chain.

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• [OIDC] Use preferred_username claim to load current user from repository.

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• [OIDC] Add default Keycloak role claim to config.properties.

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• [Doc] Add documentation for setting up OIDC authentication.

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• [Del] Delete unused OIDC-related constant.

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Commits on Nov 2, 2023

• [kbss-cvut/23ava-distribution#10] Modify Record to use an identifier generated by DAO instead of JOPA.

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• Merge pull request #5 from akaene/main

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• [kbss-cvut/23ava-distribution#10] Store records in contexts corresponding to their identifiers.

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• [kbss-cvut/23ava-distribution#10] Ensure record id is generated in FormGenDao.

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• [Ref] More useful exception logging.

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• Merge branch 'kbss-cvut:main' into main

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Commits on Nov 3, 2023

• Add GH action to push docker image

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• Merge pull request #7 from kbss-cvut/publish-docker-image

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Commits on Nov 8, 2023

• Add basic docker-compose configuration using GraphDB.

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• [Del] Delete obsolete s-forms install script.

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Commits on Nov 13, 2023

• [OIDC] Modify role mapping from OIDC access token.

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• [Docker] Provide working Docker Compose configuration.

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• Merge branch 'kbss-cvut:main' into main

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Commits on Nov 19, 2023

• Fix GH actions in PRs from a fork

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• Merge pull request #8 from kbss-cvut/fix-gh-action-in-pull-requests-from-fork

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• [Upd] Make generic pattern how to retrieve form template

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• [Fix] Fix synatax error in query

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• Update db-server/repo-config/config-record-manager.ttl

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• Update db-server/repo-init.sh

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• Update db-server/repo-config/config-record-manager-formgen.ttl

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• Update docker-compose.yml

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• Update docker-compose.yml

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• Apply suggestions from code review

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• Merge pull request #6 from akaene/main

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• [Fix] Fix parsing of AllowedOrigins from appContext variable

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• Merge pull request #9 from kbss-cvut/fix-parsing-origin-from-app-context

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Commits on Nov 21, 2023

• [#10] Support configuring allowedOrigins via explicit config parameter.

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Commits on Nov 22, 2023

• [#10] Test allowedOrigins configuration retrieval.

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• Merge pull request #11 from akaene/main

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• [kbss-cvut/23ava-distribution#18] Implement user impersonate using Spring Security SwitchUserFilter.

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• [kbss-cvut/23ava-distribution#18] Provide client with info that current user is impersonator.

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Commits on Nov 23, 2023

• Merge branch 'kbss-cvut:main' into main

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• [New] Add logs related to configured Access-Control-Allow-Origin

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• [Upd] Update defaults configuration values

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• [Upd] Improve documentation of configuration values

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• [Fix] Fix docker compose configuration issues after renaming the app repo and backend service.

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• [kbss-cvut/23ava-distribution#18] Add getByUsername endpoint back to OIDC-based users REST controller.

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• [kbss-cvut/23ava-distribution#18] Enable features required for impersonation in Keycloak.

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• [Fix] Fix reference to record-manager-app repository

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• [Fix] Bad name of repository configuration file

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Commits on Nov 24, 2023

• [#15] Fix CORS issue in keycloak authorization set up

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Commits on Nov 25, 2023

• [New] Add automatic deployment of form templates

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Commits on Nov 28, 2023

• Update docker-image.yml

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• Update docker-image.yml

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• Merge pull request #16 from kbss-cvut/issues-12

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• Update docker-image.yml

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• Update docker-image.yml

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• Update docker-image.yml

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• Update docker-image.yml

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• Update docker-image.yml

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• Update docker-image.yml

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• Update docker-image.yml

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• [#13] Throw error when allowed origins are not configured

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• [#13] Empty origins should not result in *

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• Merge pull request #14 from kbss-cvut/fix-case-when-allowed-origins-are-not-configured

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Commits on Nov 29, 2023

• [Fix] Fix accidental change of frontend image in docker-compose.yml.

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• Merge branch 'kbss-cvut:main' into main

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• [Fix] Fix upstream merge issues.

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• Merge pull request #26 from akaene/main

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Commits on Dec 1, 2023

• [#27] Fix exception when saving record twice

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• Merge remote-tracking branch 'origin/main'

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Commits on Dec 5, 2023

• [kbss-cvut/record-manager-ui#23] Prevent accidental update of user types when referencing current user.

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• Fix accidental commit

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Commits on Dec 6, 2023

• Merge pull request #28 from akaene/main

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Commits on Dec 7, 2023

• [#29] Extend record manager ontology with generic record states.

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• [#29] Add state object property to PatientRecord

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• [Upd] Remove constraint for User to be part of Institution

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Commits on Dec 8, 2023

• [#29] Fix label of rm:has-state

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• Merge branch 'main' into issues/29-add-record-state

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• [#29] Update resources rm:has-record-state and rm:record-state in ontology model.ttl

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• [#29] Refactor type of PatientRecord.state from URI to RecordState

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Commits on Dec 11, 2023

• [#29] Refactor field PatientRecord.state to PatientRecord.phase.

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• [#29] Add phase to PatientRecord.toString

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Commits on Dec 12, 2023

• [#29] Refactor state to phase in ontology and jopa model

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• [#29] Fix compilation error

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• [#29] Add phase field to PatientRecordDto

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Commits on Dec 13, 2023

• [kbss-cvut/record-manager-ui#37] Define record export API.

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• Merge pull request #31 from /issues/29-add-record-state

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• [#29] Fix labels of record phase classes in model.ttl

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• [#29] Add rejected record phase

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• Merge pull request #36 from /issues/29-add-record-state

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• [#33] Add updateUserInstitution in OidcUserController

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• [#33] Refactor method name OidcUserController.updateUserInstitution to OidcUserController.updateUser

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• [#33] Fix implementation of updateUser

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• Merge pull request #35 from /issues/33-set-user-institution-in-keycloack-deployment

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• [kbss-cvut/record-manager-ui#37] Test record exporting API.

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• [kbss-cvut/record-manager-ui#37] Implement export of records (filterable by date period and institution).

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• Merge pull request #1 from akaene/record-manager-ui#37-records-export

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• Merge remote-tracking branch 'upstream/main'

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Commits on Dec 14, 2023

• [Fix] Fix NPE when adding new institution to user

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• [#29] Bind server.max-http-request-header-size to MAX_HTTP_REQUEST_SIZE evn variable

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Commits on Dec 15, 2023

• [kbss-cvut/record-manager-ui#37] Extend record export with filtering by record phases.

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• Remove unused import.

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• Merge pull request #37 from akaene/main

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• Merge pull request #39 from /issues/38-configure-max-http-request-header-size-by-env-var

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• Revert "[#29] Bind server.max-http-request-header-size to MAX_HTTP_REQUEST_SIZE evn variable"

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Commits on Dec 19, 2023

• [kbss-cvut/record-manager-ui#38] Add REST endpoint for importing records.

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• [kbss-cvut/record-manager-ui#38] Implement record import.

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• [kbss-cvut/record-manager-ui#38] Allow providing phase to set on all imported records.

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Commits on Dec 22, 2023

• [kbss-cvut/record-manager-ui#38] Set imported record provenance according to acceptance criteria.

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• [kbss-cvut/record-manager-ui#38] Set imported record phase to open unless specified otherwise.

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Commits on Dec 27, 2023

• Merge pull request #41 from akaene/main

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Commits on Dec 28, 2023

• [#40] Use JOPA 2.0.0-SNAPSHOT which removes dependency on AspectJ.

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• Merge pull request #42 from akaene/main

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Commits on Jan 3, 2024

• [Upd] Reformat

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Commits on Jan 24, 2024

• [kbss-cvut/record-manager-ui#71] Reduce the size of PatientRecordDto data.

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Commits on Jan 30, 2024

• [Upd] Update dependencies to work with the latest JOPA 2.0.0-SNAPSHOT build.

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Commits on Jan 31, 2024

• [kbss-cvut/record-manager-ui#71] Implement filtering, paging and sorting in PatientRecordDao.

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• [kbss-cvut/record-manager-ui#71] Simplify PatientRecordService API, use generic record filtering to get records from institution.

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• [kbss-cvut/record-manager-ui#71] Add support for paging and sorting to record REST API.

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• [kbss-cvut/record-manager-ui#71] Return HATEOAS response headers when using paging.

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• Merge pull request #2 from akaene/record-manager-ui#71-filtering-paging-sorting

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Commits on Feb 1, 2024

• Merge pull request #45 from akaene/main

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Commits on Feb 6, 2024

• [kbss-cvut/record-manager-ui#71] Harmonize action history paging with record paging.

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• Merge branch 'kbss-cvut:main' into main

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• [kbss-cvut/record-manager-ui#71] Ensure first and last rel links are always present in paged record response.

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Commits on Feb 8, 2024

• [kbss-cvut/record-manager-ui#71] Support providing record phase for filtering (and import) as either IRI or name.

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• Merge pull request #46 from akaene/main

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Commits on Feb 9, 2024

• Merge remote-tracking branch 'origin/main'

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Commits on Apr 23, 2024

• Add total item count header to paged responses.

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• Merge pull request #49 from akaene/main

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Commits on May 2, 2024

• [kbss-cvut/23ava-distribution#78] Change rm:user to foaf:Person

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• Merge pull request #50 from kbss-cvut/change-rm-user-to-foaf-person

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• [Upd] Migrate registry from docker.pkg.github.com to ghcr.io

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• Fix documentation

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• [Upd] Migrate to new address of docker images

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• [kbss-cvut/record-manager-ui#168] Add filtering of records according to form templates

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• [Upd] Upgrade JOPA version from snapshot to release

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• Merge pull request #51 from kbss-cvut/add-record-filtering-by-templates

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• [Upd] Suppress warning of unchecked method invocation

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Commits on Jul 9, 2024

• [Fix partially #36] Add dependency on POI

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• [Fix partially #36] Add excel template for record export

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• [Fix partially #36] Add excel export implementation

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• [Fix partially #36] Extend rest api to support record export in Excel

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• [Fix partially kbss-cvut/record-manager-ui#36] Remove injected httpServletResponse

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• [Fix partially kbss-cvut/record-manager-ui#36] Consider Accept header when extracting exportType from request. exportType uri parameter takes precedence over Accept header.

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• [Fix partially kbss-cvut/record-manager-ui#36] Refactor handling of institution request parameter.

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• [Fix partially kbss-cvut/record-manager-ui#36] Implement paging request parameters support for excel export

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• [Fix partially kbss-cvut/record-manager-ui#36] Export modified date

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• [Fix partially kbss-cvut/record-manager-ui#36] Update record-export-template.xlsx file

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• Merge pull request #52 from kbss-cvut/feature/record-manager-ui-36-export-filtered-records-to-excel

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• [Fix partially kbss-cvut/record-manager-ui#36] Make sure that default export type is selected if exportType query parameter and Accept header do contain a supported export type.

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• Merge pull request #53 from kbss-cvut/feature/record-manager-ui-36-export-filtered-records-to-excel

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• [Fix partially kbss-cvut/record-manager-ui#175] Disable SystemInitializer in oidc configuration

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• Merge pull request #54 from kbss-cvut/fix/record-manager-ui-75-disable-system-initializer-in-oidc-config

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• [Fix partially kbss-cvut/23ava-distribution#120] Optimize records export

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• [Fix partially kbss-cvut/23ava-distribution#120] Fix failing tests by reverting optimization, wrapping where clause in named graphs, for record export as JSON

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• Merge pull request #55 from kbss-cvut/fix/23ava-distribution-120-optimze-record-export

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• [Fix partially kbss-cvut/record-manager-ui#182] Call onRecordUpdateServiceUrl if configured when record is updated.

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• [Fix partially kbss-cvut/record-manager-ui#182] Fix failing test

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• Merge pull request #57 from kbss-cvut/feature/record-manager-ui-182-record-update-event

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• Fix empty excel export, fix fha matching fha question origin in sparql query

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• Fix missing last modified date in Excel export.

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• Merge pull request #58 from kbss-cvut/fix/fix-excel-export

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• [Fix kbss-cvut/record-manager-ui#185] Fix wrong format of field numberOfOverhaulsOfDefectiveEquipment in query fetching exported data

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• [Fix kbss-cvut/record-manager-ui#185] Fix exported excel is empty in operator

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• [Fix kbss-cvut/record-manager-ui#185] Avoid adding null numbers to excel as it throws NullPointerException

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• Merge pull request #59 from kbss-cvut/fix/record-manager-ui-185-fix-exporting-records-in-excel

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• [kbss-cvut/record-manager-ui#184] Add excelImportServiceUrl param to ConfigParam

  

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• [kbss-cvut/record-manager-ui#184] Add Excel type to importRecords

  

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• [kbss-cvut/record-manager-ui#184] Update importRecords endpoint for supporting excel file.

  

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• [kbss-cvut/record-manager-ui#184] Changed handler for importing json and excel. Divided into two handlers

  

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• [kbss-cvut/record-manager-ui#184] Updated tests for importRecords

  

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• [kbss-cvut/record-manager-ui#184] Fix test importRecordsJsonImportsSpecifiedRecordsWithSpecifiedPhaseAndReturnsImportResult

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• [kbss-cvut/record-manager-ui#184] Fixed importRecordsJsonImportsSpecifiedRecordsAndReturnsImportResult importRecordsJsonReturnsConflictWhenServiceThrowsRecordAuthorNotFound

  

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• [kbss-cvut/record-manager-ui#184] Implement detached import through TSV endpoint

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• Merge pull request #60 from kbss-cvut/184-support-excel-import

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• [kbss-cvut/record-manager-ui#186] Improve error message when user is not assigned to an institution

  

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• Reformat

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• Merge pull request #62 from kbss-cvut/186-checkUserInstitutionHandler

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• [Fix partially kbss-cvut/record-manager-ui#180] Add publish rest api (partial)

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• Merge pull request #56 from kbss-cvut/feature/record-manager-ui-180-publish-records

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• [Fix kbss-cvut/record-manager-ui#194] Fix excel export, filter out null elements from input to getBroaderPath to avoid NullPointerException

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• Merge pull request #64 from kbss-cvut/fix/record-manager-ui-194-fix-excel-export

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• [#kbss-cvut/23ava-distribution/133] Fix modification author if not admin

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• [kbss-cvut/record-manager-ui#202] Implement roles

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