[biobb_godmd] update 5.0.0 #52194
[biobb_godmd] update 5.0.0 #52194
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📝 WalkthroughWalkthroughThe pull request introduces updates to the Possibly related PRs
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🔇 Additional comments (5)recipes/biobb_godmd/meta.yaml (5)Line range hint The build configuration is well-structured:
🧰 Tools🪛 yamllint[error] 1-1: syntax error: found character '%' that cannot start any token (syntax)
The description maintains the package information while correctly updating the copyright years to 2024.
Ensure the SHA256 checksum matches the source tarball from PyPI.
The updated requirements need verification:
Also applies to: 28-29 ✅ Verification successfulPython 3.9 requirement and biobb_common 5.0.0 update are justified The codebase analysis shows:
The dependency updates are part of a coordinated upgrade across the biobb package ecosystem, ensuring compatibility and consistency. 🏁 Scripts executedThe following scripts were executed for the analysis: Script: #!/bin/bash
# Check if biobb_common 5.0.0 is available in bioconda
conda search -c bioconda biobb_common=5.0.0
# Check if there are any reverse dependencies that might be affected by
# the increased Python requirement
conda search -c bioconda --depends biobb_godmd | grep 'depends:.*python'
Length of output: 252 Script: #!/bin/bash
# Let's check the repository for any references to biobb_common version requirements
# and Python version requirements to understand the context better
# Search for Python version requirements in the codebase
rg -A 2 "python.*>=3\.9|>=.*python.*3\.9"
# Search for biobb_common version references
rg -A 2 "biobb_common.*==5\.0\.0|biobb_common.*>=5\.0\.0"
# Check if there's any documentation or changelog explaining version updates
fd "CHANGELOG|README" --type f --exec cat {}
Length of output: 43618
The version bump from 4.2.0 to 5.0.0 indicates breaking changes. This aligns with the increased Python requirement (>=3.9) and updated biobb_common dependency. ✅ Verification successfulVersion bump to 5.0.0 is consistent with ecosystem updates The version bump from 4.2.0 to 5.0.0 is verified to be part of a broader ecosystem update:
🏁 Scripts executedThe following scripts were executed for the analysis: Script: #!/bin/bash
# Check for potential breaking changes in the changelog or release notes
fd -g CHANGELOG.md -g HISTORY.md -g NEWS.md -x cat {} \; 2>/dev/null
# Check the GitHub releases page
gh api repos/bioexcel/biobb_godmd/releases/latest --jq '.body'
Length of output: 279 Script: #!/bin/bash
# Let's check the repository URL from meta.yaml to ensure we're looking at the right source
rg -l "github.com.*biobb_godmd" recipes/biobb_godmd/meta.yaml
# Check the source code URL and version tags
rg "url:|git_url:|git_rev:" recipes/biobb_godmd/meta.yaml
# Look for any documentation about version changes in README
fd -g "README*" -x cat {} \; 2>/dev/null
# Check if there are any other biobb packages with similar version bumps
fd -g "meta.yaml" -p "*biobb*" --exec grep "version =" {} \;
Length of output: 6961 Script: #!/bin/bash
# Let's check the entire meta.yaml content to understand the context better
cat recipes/biobb_godmd/meta.yaml
# Check other biobb packages in the recipes directory
find recipes -type f -name "meta.yaml" -path "*/biobb_*/*" -exec grep "version =" {} \;
# Look for any related PRs or issues that might explain the version bump
find recipes/biobb_godmd -type f -exec grep -l "5.0.0\|4.2.0" {} \;
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