pybbi: add linux-aarch64 build

[martin-g]

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[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request involves updates to the meta.yaml file for the pybbi package. The version number remains at 0.4.1, but the build number has been incremented from 0 to 1. The sha256 hash is unchanged. A new directive in the build section specifies that builds should be skipped on macOS. The requirements section remains unchanged. In the about section, the summary line has been reformatted for consistency. An extra section has been added, introducing additional-platforms with the entry linux-aarch64. The recipe-maintainers entry has not been modified. Overall, the changes focus on the build number increment, the addition of platform support for linux-aarch64, and minor formatting adjustments.

Possibly related PRs

• tracs: add aarch64/arm64 builds #50103: Updates the meta.yaml file for the tracs package, adding linux-aarch64 as an additional platform.
• pyslow5: add aarch64/arm64 builds #51105: Modifies the meta.yaml file for pyslow5, adding linux-aarch64 and incrementing the build number.
• metacache: add linux-aarch64 build #51106: Updates the meta.yaml file for the metacache package to include linux-aarch64 and increments the build number.
• gxf2bed: add aarch64/arm64 builds #51120: Introduces linux-aarch64 builds for the gxf2bed package by updating the meta.yaml file.
• phables: add aarch64/arm64 builds #51124: Updates the meta.yaml file for the phables package to add linux-aarch64 as an additional platform.
• r-cobrar: add aarch64/arm64 builds #51203: Updates the meta.yaml file for r-cobrar, adding linux-aarch64 as an additional platform.
• vcf-validator: add linux-aarch64 build #51425: Updates the meta.yaml file for the vcf-validator package to include linux-aarch64.
• cloudspades: add linux-aarch64 build #51446: Adds linux-aarch64 support in the cloudspades package's meta.yaml.
• genbank: add aarch64/arm64 builds #51448: Updates the meta.yaml file for the genbank package to include linux-aarch64.

Suggested labels

please review & merge

Suggested reviewers

• rpetit3

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 50fd1c1 and 4c9da93.

📒 Files selected for processing (1)

• recipes/pybbi/meta.yaml (2 hunks)

🧰 Additional context used

🔇 Additional comments (4)

recipes/pybbi/meta.yaml (4)

Line range hint 46-46: LGTM: Improved formatting.

The summary line has been reformatted for better consistency. This change is purely cosmetic and improves the overall readability of the file.

---

Line range hint 1-53: Summary of changes and recommendations

The changes to the meta.yaml file for the pybbi package are generally good and align with the PR objectives. Here's a summary of the key points:

1. The build number increment is correct.
2. The addition of linux-aarch64 support is approved.
3. The formatting improvements in the about section are appreciated.

However, please address the following points:

1. Verify if skipping the build for macOS is intentional and doesn't negatively impact the package availability.
2. Ensure that the CI configuration supports building for linux-aarch64 and that appropriate tests are in place for the new platform.

Once these points are addressed, the PR should be ready for final review and merge.

---

50-51: Verify CI configuration for linux-aarch64 support.

The addition of linux-aarch64 to the additional-platforms list is in line with the PR objective. This change is approved.

To ensure proper implementation, please verify the following:

1. CI configuration supports building for linux-aarch64.
2. Necessary tests are in place for the new platform.

Run the following script to check for any existing aarch64-related configuration:

#!/bin/bash
# Description: Check for existing aarch64 configuration

# Test: Search for aarch64-related content in CI configuration
rg -i 'aarch64|arm64' .github

---

13-14: Verify the macOS build skip directive.

The build number increment is correct. However, the new skip directive for macOS needs verification.

Please confirm if skipping the build for macOS is intentional and aligns with the package requirements. Run the following script to check if there are any macOS-specific dependencies or build instructions that might be affected:

✅ Verification successful

The macOS build skip directive appears unnecessary.

The skip: True # [osx] directive in recipes/pybbi/meta.yaml does not correspond to any macOS-specific dependencies or build instructions in the file. It is recommended to remove this directive unless there's a specific reason supported by other parts of the codebase.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for macOS-specific content in the recipe

# Test: Search for macOS-related content
rg -i 'macos|darwin|osx' recipes/pybbi

Length of output: 676

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[martin-g]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Package(s) built are ready for inspection:

Arch	Package	Zip File / Repodata	CI	Instructions
linux-64	pybbi-0.4.1-py310ha96f9f7_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	pybbi-0.4.1-py311hd74b492_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	pybbi-0.4.1-py312he52417b_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	pybbi-0.4.1-py38h23c55b0_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64	pybbi-0.4.1-py39had97721_1.tar.bz2	LinuxArtifacts.zip	Azure	show You may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-aarch64	pybbi-0.4.1-py310hd315b43_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/bfdd772e-c898-45a2-ba42-9f66af0d52e5/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	pybbi-0.4.1-py311hd89847b_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/bfdd772e-c898-45a2-ba42-9f66af0d52e5/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	pybbi-0.4.1-py312h4a69d50_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/bfdd772e-c898-45a2-ba42-9f66af0d52e5/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	pybbi-0.4.1-py38h2cdc35c_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/bfdd772e-c898-45a2-ba42-9f66af0d52e5/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64	pybbi-0.4.1-py39he49a98d_1.tar.bz2	repodata.json	CircleCI	show You may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/bfdd772e-c898-45a2-ba42-9f66af0d52e5/artifacts/0/tmp/artifacts/packages <package name>

---

Docker image(s) built:

Package	Tag	CI	Install with docker
pybbi	0.4.1--py310ha96f9f7_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/pybbi:0.4.1--py310ha96f9f7_1.tar.gz | docker load
pybbi	0.4.1--py311hd74b492_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/pybbi:0.4.1--py311hd74b492_1.tar.gz | docker load
pybbi	0.4.1--py312he52417b_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/pybbi:0.4.1--py312he52417b_1.tar.gz | docker load
pybbi	0.4.1--py38h23c55b0_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/pybbi:0.4.1--py38h23c55b0_1.tar.gz | docker load
pybbi	0.4.1--py39had97721_1	Azure	show Images for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/pybbi:0.4.1--py39had97721_1.tar.gz | docker load

[martin-g]

mgrigorov in 🌐 euler-arm-22 in /tmp/pybbi via 🅒 test123 took 2s 
❯ tar xvf pybbi-0.4.1-py310hd315b43_1.tar.bz2                                                                                                                                                              (test123) 
info/test/run_test.py
info/run_exports.json
info/recipe/build.sh
info/hash_input.json
info/has_prefix
info/index.json
info/files
info/recipe/meta.yaml.template
info/recipe/meta.yaml
info/paths.json
info/recipe/conda_build_config.yaml
info/about.json
info/git
lib/python3.10/site-packages/bbi/cbbi.pxd
lib/python3.10/site-packages/bbi/cbbi.c
lib/python3.10/site-packages/bbi/__init__.py
lib/python3.10/site-packages/bbi/_bbi.py
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/INSTALLER
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/WHEEL
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/LICENSE
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/RECORD
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/METADATA
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/REQUESTED
lib/python3.10/site-packages/bbi/cbbi.pyx
lib/python3.10/site-packages/bbi/__pycache__/__init__.cpython-310.pyc
lib/python3.10/site-packages/bbi/__pycache__/_bbi.cpython-310.pyc
lib/python3.10/site-packages/bbi/cbbi.cpython-310-aarch64-linux-gnu.so
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/direct_url.json
lib/python3.10/site-packages/pybbi-0.4.1.dist-info/top_level.txt

mgrigorov in 🌐 euler-arm-22 in /tmp/pybbi via 🅒 test123 
❯ file lib/python3.10/site-packages/bbi/cbbi.cpython-310-aarch64-linux-gnu.so                                                                                                                              (test123) 
lib/python3.10/site-packages/bbi/cbbi.cpython-310-aarch64-linux-gnu.so: ELF 64-bit LSB shared object, ARM aarch64, version 1 (SYSV), dynamically linked, with debug_info, not stripped

LGTM!

[martin-g]

@BiocondaBot please add label