Update meta.yaml

[xies4]

singularity build RSeQC_v5.0.3.sif docker:quay.io/biocontainers/rseqc:5.0.3--py311hdad781d_2
singularity exec --no-home --cleanenv RSeQC_v5.0.3.sif sc_bamStat.py

Traceback (most recent call last):
File "/usr/local/bin/sc_bamStat.py", line 11, in
from qcmodule import scbam
File "/usr/local/lib/python3.11/site-packages/qcmodule/scbam.py", line 12, in
import pandas as pd
ModuleNotFoundError: No module named 'pandas'

Python module pandas is not installed.

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

The pull request introduces several modifications to the meta.yaml file for the RSeQC package. The version is updated to "5.0.3", and the package name is specified in lowercase. The source URL is constructed from the package name and version, accompanied by a SHA256 checksum for integrity verification. The build section indicates an increment in the build number from 2 to 3, and the build script is updated to include the --no-cache-dir option for pip installation.

In the requirements section, the build requirements remain unchanged, while the host requirements continue to list pip, Python, Cython (version 0.12 or higher), and Nose. The run requirements have been modified to include pandas, while pip has been removed from this section, alongside existing dependencies such as bx-python, numpy, pybigwig, pysam, python, and r-base.

The test section specifies imports from the qcmodule and includes commands to check the usage of read_distribution.py and geneBody_coverage.py. The about section provides relevant metadata, and the extra section lists additional platforms and identifiers.

Possibly related PRs

• Update meta.yaml for spec2vec #49857: The changes in the meta.yaml file for the spec2vec package include modifications to the build script and build number, similar to the updates made in the meta.yaml for the RSeQC package.
• Update PhyloAcc recipe #51090: The meta.yaml file for the PhyloAcc package has a build number increment, akin to the changes in the RSeQC package's build number.
• galaxy_sequence_util: pin python #51102: The galaxy_sequence_utils package's meta.yaml also features a build number update, paralleling the changes in the RSeQC package.
• Update piawka #51239: The piawka package's meta.yaml includes a version update and dependency changes, which are similar in nature to the modifications made in the RSeQC package's meta.yaml.

Suggested labels

please review & merge, new version

Suggested reviewers

• martin-g

---

📜 Recent review details

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📥 Commits

Files that changed from the base of the PR and between c435c40 and 3748974.

📒 Files selected for processing (1)

• recipes/rseqc/meta.yaml (2 hunks)

🚧 Files skipped from review as they are similar to previous changes (1)

• recipes/rseqc/meta.yaml

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[martin-g]

You need to bump the build number field