chore(main): release 0.5.0

[github-actions]

🤖 I have created a release beep boop

0.5.0 (2025-01-15)

⚠ BREAKING CHANGES

• remove deprecated functionality of cubi-tk archive

Features

• add --filter-status option for controlling which landing zones are listed (#239) (900b67a)
• add cubi-tk sodar update-samplesheet (#240) (581e650)
• Add common functions for interfacing with python-irodsclient (#202) (67e6e49)
• Add generic SODAR ingest command (#199) (8548c97)
• Add new command sodar landing-zone-validate (#219) (98e21c1)
• Adding cubi-tk snappy itransfer_sv_calling (#213) (5a00e40)
• allow varfish case resubmission (#224) (964bcac)
• irods download refactoring and new generic sodar downloader with preset for dragen data (#226 ) (#227) (3fc38af)
• presets for cubi-tk sodar ingest-fastq (#232 ) (#235) (8669118)
• Switching cubi-tk sodar ingest-fastq from icommands to irods_common (#217) (cd9a3b9)
• Update ingest-fastq, allow to match samples against assay table to determine collections names (#198) (#203) (8b3662d)

Bug Fixes

• adapt to varfish-cli >=0.6.2 syntax (#221) (9619609)
• isa-tab add-ped now only modifies values on process nodes of ped-supplied samples #207 (#233) (88977d4)
• parsing snappy config for with WGS projects (#231) (10592f3)
• varfish cli 06x uses new import syntax (#220) (#222) (cb10dbb)
• varfish-upload subprocess submission (#225) (0f7f5b2)

Miscellaneous Chores

• remove functionality (133bc87)
• Update list of authors (ae7525e)

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[github-actions]

🤖 Created releases:

• v0.5.0
  🌻