Releases · bids-standard/bids-matlab

What's Changed

Note some changes are missing from these release notes, but should be listed in the pull request that merged the dev branch in the main branch.

[FIX] do not create empty json when copying to derivatives by @Remi-Gau in #322
[DOC] add orcid numbers to CITATION.CFF by @Remi-Gau in #337
[INFRA] only run update schema on upstream repo by @Remi-Gau in #343
[FIX] change download of moae demo dataset by @Remi-Gau in #351
[FIX] Skip missing suffix subgroup by @Remi-Gau in #365
[FIX] add test to catch error for invalid entities by @Remi-Gau in #367
[FIX] add warning when indexing folder with invalid MATLAB structure name by @Remi-Gau in #366
[DOC & ENH] update doc query and allow to query any BIDS entity by @Remi-Gau in #368
[REF] Use JSON version of the schema by @Remi-Gau in #415
[ENH] add NIRS support by @Remi-Gau in #433
[FIX] query with empty subject should return empty and not fail by @Remi-Gau in #455
[FIX] fix spelling with codespell by @Remi-Gau in #457
[FIX] make bids.copy strict by default by @Remi-Gau in #468
[FIX] add try catch for rare errors on invalid bids datasets by @Remi-Gau in #471
[FIX] cleaner handling of missing dependency by @nbeliy in #473
[FIX] do not index files that start with certain string by @Remi-Gau in #479
[FIX] remove byte order mark from tsv file by @Remi-Gau in #556
[FIX] handle nan and and datetimes when printing tables by @Remi-Gau in #605
[MAINT] change to MIT license by @Remi-Gau in #653
[MAINT] Drop dev branch by @Remi-Gau in #654

Full Changelog: v0.1.0...v0.2.0

What's Changed

Bids report by @Remi-Gau in #1
small fix in a filter that skipped json files when they were in the root folder by @Remi-Gau in #8
Readme update: Add converter and viewer by @tanguyduval in #13
[WIP] Unit tests - read metadata by @Remi-Gau in #10
Query by @tanguyduval in #12
multi file datasets (such as BrainVision) should be represented as a single dataset, not multiple by @robertoostenveld in #14
Add some extra comments to better explain each function by @Remi-Gau in #21
More detailed error messages by @apjanke in #30
gitignore: ignore local copy of bids-examples by @apjanke in #31
util.tsvread: Make it a recursive call to self by @apjanke in #33
util: Support jsonencode/jsondecode as regular functions by @apjanke in #24
Include QUERY in the H1 line for query's helptext by @apjanke in #29
Make function helptext more concise with a +bids/Contents.m by @apjanke in #32
README: Document requirements by @apjanke in #36
Handle non-standard-format metadata JSON files by @apjanke in #37
Doc: Typo fixes in comments and helptext by @apjanke in #38
Refactoring and renaming by @Remi-Gau in #41
Create a tsvwrite function by @Remi-Gau in #40
Tolerant option for bids.layout by @tanguyduval in #11
docs: add gllmflndn as a contributor by @allcontributors in #52
docs: add Remi-Gau as a contributor by @allcontributors in #53
docs: add apjanke as a contributor by @allcontributors in #54
docs: add tanguyduval as a contributor by @allcontributors in #55
docs: add robertoostenveld as a contributor by @allcontributors in #56
Fix or suppress M-lint code inspection warnings by @Remi-Gau in #57
Move +bids/private stuff to +bids/+internal? by @apjanke in #25
[INFRA] Use Ubuntu Focal 20.04 in Travis tests by @gllmflndn in #72
[FIX] Filter subjects and sessions when querying modalities (issue #65) by @gllmflndn in #71
[FIX] fix writing nan issues when dealing with arrays by @Remi-Gau in #74
Add Brainstorm to README by @cMadan in #62
add code of conduct from bids-specs by @Remi-Gau in #80
[INFRA] set up miss_hit linter config and github action by @Remi-Gau in #58
Add tsvwrite to documentation by @gllmflndn in #85
miss_hit.cfg: define project_root by @apjanke in #87
docs: add apjanke as a contributor by @allcontributors in #88
README: fix MISS_HIT name styling by @apjanke in #89
Add .editorconfig? by @apjanke in #86
docs: add apjanke as a contributor by @allcontributors in #90
docs: add cMadan as a contributor by @allcontributors in #91
docs: add guiomar as a contributor by @allcontributors in #93
Skip datasets when labelled as non-conformant by @gllmflndn in #94
[DOC] Describe what bids-matlab can and cannot do by @Remi-Gau in #84
apply MISS_HIT linter across the board by @Remi-Gau in #95
Decision making & contributing by @Remi-Gau in #81
[FIX] add "dir" to the list of func entities by @Remi-Gau in #99
[INFRA] Customize code suggestions & completions by adding a functionSignatures file by @mslw in #42
docs: add mslw as a contributor by @allcontributors in #106
[INFRA] conversion BIDS schema to json by @Remi-Gau in #101
Changes by create-pull-request action by @github-actions in #110
[INFRA] run tests with github action by @Remi-Gau in #100
[INFRA] switch to moxunit for tests by @Remi-Gau in #108
refactoring and linting by @Remi-Gau in #109
[ENH] update schema - changes by create-pull-request action by @github-actions in #119
Changes by create-pull-request action by @github-actions in #120
Changes by create-pull-request action by @github-actions in #125
Changes by create-pull-request action by @github-actions in #128
Feature #asl bids by @HenkMutsaerts in #127
[MISC] refactor and add tests for layout asl by @Remi-Gau in #132
docs: add HenkMutsaerts as a contributor by @allcontributors in #135
Changes by create-pull-request action by @github-actions in #136
Changes by create-pull-request action by @github-actions in #138
docs: add nbeliy as a contributor by @allcontributors in #139
[ENH] implement bids-schema - part 1 by @Remi-Gau in #124
[ENH] schemaless layout indexes json files by @Remi-Gau in #147
[ENH] add possibility to query for (and filter queries with) extensions by @Remi-Gau in #150
[ENH] improve management of "intended_for" by @Remi-Gau in #151
[ENH] update fieldname m0 scan estimate by @Remi-Gau in #149
docs: add mnoergaard as a contributor by @allcontributors in #158
docs: add nbeliy as a contributor by @allcontributors in #159
Bug in file_utils by @nbeliy in #166
[HOT FIX] fixed bug in file_utils by @Remi-Gau in #168
[HOT FIX] implement hot fix for tsv write by @Remi-Gau in #170
[ENH] schema-less indexing collects files prefix that can be returned / filtered by query by @Remi-Gau in #154
[HOT FIX] implement hot fix for tsv write by @Remi-Gau in #173
[INFRA] BIDS schema update by @Remi-Gau in #180
[INFRA] remove obsolete schema files by @Remi-Gau in #181
[FIX] lower priority to use SPM function to deal with json files by @Remi-Gau in #178
Changes by create-pull-request action by @github-actions in #188
[DOC] update instructions to run the tests by @Remi-Gau in #183
[ENH] index sessions.tsv and scans.tsv by @Remi-Gau in #182
[FIX] default pattern of get_metada expects suffixes to be preceded by underscore by @Remi-Gau in #179
[FIX] default pattern of get_metada expects suffixes to be preceded by underscore by @Remi-Gau in #189
Changes by create-pull-request action by @github-actions in #191
Changes by create-pull-request action by @github-actions in #193
[FIX] ensures that metadata file have the same prefix as the queried file by @Remi-Gau in #195
[DOC] update install is...