Merge branch 'sort' (adds --sort-by-name) #105
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| name: tests | |
| on: [push] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| python-version: ['3.10'] | |
| name: Python ${{ matrix.python-version }} (${{ matrix.os }}) | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup conda | |
| uses: s-weigand/setup-conda@v1 | |
| with: | |
| update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| conda-channels: conda-forge, bioconda | |
| - name: Install | |
| run: | | |
| conda install bowtie2>=2.5.1 minimap2>=2.26 samtools>=1.17 gawk>=5.1.0 bedtools>=2.31.0 | |
| pip install '.[dev]' | |
| - name: Test | |
| run: | | |
| python -m pytest |