Releases: ave-dcd/dcd_mapping
Releases · ave-dcd/dcd_mapping
0.2.0
What's Changed
- test: fix fixture construction by @jsstevenson in #58
- fix: perform appropriate cleanup after seqrepo check by @jsstevenson in #59
- cicd: update github actions versions by @jsstevenson in #62
- style: update ruff by @jsstevenson in #61
- cicd: update precommit and add new hooks by @jsstevenson in #60
- fix: ensure proper ref seq by @jsstevenson in #63
- feat!: Use VRS 2.0 models as primary output by @jsstevenson in #57
- Update notebooks, alignment, and mapping code by @jarbesfeld in #64
- Add check in transcript selection to determine if start and end coordinates fully bound an exon by @jarbesfeld in #66
- Fix typo for experiment set 97 by @jarbesfeld in #67
- Update alignment code for other/noncoding score sets by @jarbesfeld in #68
- chore: add schema refresher by @jsstevenson in #71
- Correct alignment logic, ensure proper variant selection for post-mapped genomic variants by @jarbesfeld in #70
- Update mappings link in README by @jarbesfeld in #72
- chore: remove notebook checkpoint by @jsstevenson in #74
- Update README to indicate 0.1.3 dcd-mapping release by @jarbesfeld in #75
- docs: add citation to readme by @jsstevenson in #77
- feat!: Modify annotations and schemas by @jarbesfeld in #76
Full Changelog: 0.1.3...0.2.0
0.1.3
What's Changed
- docs: add zenodo badge by @jsstevenson in #50
- feat: add data prereq checks to CLI by @jsstevenson in #54
- build: pin dependencies by @jsstevenson in #56
Full Changelog: 0.1.2...0.1.3
0.1.2
0.1.1
What's Changed
- build: add license metadata by @jsstevenson in 3245bcb
- nb: update reqs.txt by @jsstevenson in #48
Full Changelog: 0.1.0...0.1.1
0.1.0
What's Changed
- Add initial notebook by @jarbesfeld in #2
- Add RefSeq url scraping by @jarbesfeld in #4
- display output in notebook by @jarbesfeld in #6
- Add MaveDB Analysis Notebook by @jarbesfeld in #8
- Issue 9 by @jarbesfeld in #11
- package development/refactor work by @jsstevenson in #27
- feat: enable configuration of BLAT binary path by @jsstevenson in #28
- fix: handle latest mavedb API updates by @jsstevenson in #29
- style: update ruff by @jsstevenson in #30
- Analysis refactor changes by @jsstevenson in #31
- build: require >=3.10 by @jsstevenson in #32
- test: reorganize + remove VRS tests from CI by @jsstevenson in #34
- feat!: rename VRS 1.3 class by @jsstevenson in #33
- docs: update READMEs by @jsstevenson in #35
- feat: support ?/Xaa variants by @jsstevenson in #39
- refactor annotate and VRS_map modules by @jsstevenson in #41
- feat: additional analysis refactoring by @jsstevenson in #47
- April/May analysis refactor by @jsstevenson in #46
New Contributors
- @jarbesfeld made their first contribution in #2
- @jsstevenson made their first contribution in #27
Full Changelog: https://github.com/ave-dcd/dcd_mapping/commits/0.1.0